Detail information of GWHGAAEX008474/evm.TU.scaffold_22.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28103.00E-109Checkpoint 9-1-1 complex, RAD9 component
nrgi|743844745|ref|XP_010938419.1|2.16E-177PREDICTED: cell cycle checkpoint control protein RAD9A isoform X2 [Elaeis guineensis]
trEMBLtr|D7U9W0|D7U9W0_VITVI2.00E-158Putative uncharacterized protein {ECO:0000313|EMBL:CBI39524.3}
TAIRAT3G054803.00E-109cell cycle checkpoint control protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001714904811524748+
Transcript Sequence

Network for GWHGAAEX008474

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04139.12Rad9132833.90E-69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10994RAD9A Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0000077Biological ProcessDNA damage checkpoint
GO:0030896Cellular Componentcheckpoint clamp complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.450
SRR2545915Juvenile tuber7.830
SRP108465SRR5643513five period of Gastrodia elata6.700
SRR5643514five period of Gastrodia elata6.860
SRR5643515five period of Gastrodia elata4.990
SRR5643524five period of Gastrodia elata5.810
SRR5643525five period of Gastrodia elata5.300
SRR5643528five period of Gastrodia elata5.060
SRR5643658five period of Gastrodia elata6.850
SRR5643659five period of Gastrodia elata3.170
SRR5643660five period of Gastrodia elata3.190
SRR5643661five period of Gastrodia elata3.330
SRR5643662five period of Gastrodia elata3.110
SRR5643663five period of Gastrodia elata3.160
SRR5643664five period of Gastrodia elata2.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.600
SRR6049655Rhizomagastrodiae_C368-T10_good_16.690
SRR6049656Rhizomagastrodiae_C368-T07_good_17.120
SRR6049657Rhizomagastrodiae_C368-T07_good_17.460
SRR6049658Rhizomagastrodiae_C368-T04_good_15.460
SRR6049659Rhizomagastrodiae_C368-T04_good_16.280
SRR6049660Rhizomagastrodiae_C368-T01_good_17.290
SRR6049661Rhizomagastrodiae_C368-T04_good_15.510
SRR6049662Rhizomagastrodiae_C368-T01_good_18.310
SRR6049663Rhizomagastrodiae_C368-T01_good_16.200
SRR6049664Rhizomagastrodiae_C368-T10_good_18.540
SRR6049665Rhizomagastrodiae_C368-T10_good_18.540
SRP279888GastroGastrodia elata tuber 2.06
JuvenJuvenile tuber3.93
Mother_GastroMother tuber of Gastrodia elata 3.95
Mother_JuvenMother tuber of Juvenile 7.06