Detail information of GWHGAAEX008477/evm.TU.scaffold_22.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|11497678|ref|NP_068899.1|7.00E-07hypothetical protein AF0058 [Archaeoglobus fulgidus DSM 4304]
KOGKOG34923.00E-78Ribosome biogenesis protein NIP7
nrgi|672132689|ref|XP_008789931.1|7.02E-116PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Phoenix dactylifera]
trEMBLtr|U5CUM1|U5CUM1_AMBTC5.00E-10860S ribosome subunit biogenesis protein NIP7 homolog {ECO:0000256|PIRNR:PIRNR017190}
TAIRHS77054373.00E-78Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001716723891691655-
Transcript Sequence

Network for GWHGAAEX008477

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03657.12UPF0113501832.40E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042255Biological Processribosome assembly
GO:0003723Molecular FunctionRNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.350
SRR2545915Juvenile tuber67.890
SRP108465SRR5643513five period of Gastrodia elata85.750
SRR5643514five period of Gastrodia elata93.640
SRR5643515five period of Gastrodia elata79.870
SRR5643524five period of Gastrodia elata86.420
SRR5643525five period of Gastrodia elata49.870
SRR5643528five period of Gastrodia elata35.940
SRR5643658five period of Gastrodia elata31.920
SRR5643659five period of Gastrodia elata123.550
SRR5643660five period of Gastrodia elata115.050
SRR5643661five period of Gastrodia elata113.580
SRR5643662five period of Gastrodia elata109.360
SRR5643663five period of Gastrodia elata114.830
SRR5643664five period of Gastrodia elata125.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_199.890
SRR6049655Rhizomagastrodiae_C368-T10_good_176.330
SRR6049656Rhizomagastrodiae_C368-T07_good_198.140
SRR6049657Rhizomagastrodiae_C368-T07_good_195.680
SRR6049658Rhizomagastrodiae_C368-T04_good_186.460
SRR6049659Rhizomagastrodiae_C368-T04_good_181.010
SRR6049660Rhizomagastrodiae_C368-T01_good_197.910
SRR6049661Rhizomagastrodiae_C368-T04_good_186.350
SRR6049662Rhizomagastrodiae_C368-T01_good_1111.430
SRR6049663Rhizomagastrodiae_C368-T01_good_199.100
SRR6049664Rhizomagastrodiae_C368-T10_good_1124.680
SRR6049665Rhizomagastrodiae_C368-T10_good_1124.680
SRP279888GastroGastrodia elata tuber 87.57
JuvenJuvenile tuber128.94
Mother_GastroMother tuber of Gastrodia elata 31.23
Mother_JuvenMother tuber of Juvenile 51.17