Detail information of GWHGAAEX008484/evm.TU.scaffold_22.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21110Uncharacterized conserved protein, contains WD40 repeats
nrgi|695070993|ref|XP_009382550.1|0PREDICTED: autophagy-related protein 18a-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q93VB2|AT18A_ARATH0Autophagy-related protein 18a
trEMBLtr|V4U0E1|V4U0E1_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR57510.1}
TAIRAT3G627700Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001722498122287439-
Transcript Sequence

Network for GWHGAAEX008484

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD403133440.0025
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.340
SRR2545915Juvenile tuber15.460
SRP108465SRR5643513five period of Gastrodia elata16.400
SRR5643514five period of Gastrodia elata18.220
SRR5643515five period of Gastrodia elata20.310
SRR5643524five period of Gastrodia elata21.960
SRR5643525five period of Gastrodia elata29.280
SRR5643528five period of Gastrodia elata42.590
SRR5643658five period of Gastrodia elata44.070
SRR5643659five period of Gastrodia elata17.160
SRR5643660five period of Gastrodia elata15.680
SRR5643661five period of Gastrodia elata16.870
SRR5643662five period of Gastrodia elata16.260
SRR5643663five period of Gastrodia elata14.750
SRR5643664five period of Gastrodia elata14.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.560
SRR6049655Rhizomagastrodiae_C368-T10_good_124.880
SRR6049656Rhizomagastrodiae_C368-T07_good_122.950
SRR6049657Rhizomagastrodiae_C368-T07_good_116.650
SRR6049658Rhizomagastrodiae_C368-T04_good_125.450
SRR6049659Rhizomagastrodiae_C368-T04_good_123.070
SRR6049660Rhizomagastrodiae_C368-T01_good_120.600
SRR6049661Rhizomagastrodiae_C368-T04_good_121.850
SRR6049662Rhizomagastrodiae_C368-T01_good_121.850
SRR6049663Rhizomagastrodiae_C368-T01_good_122.080
SRR6049664Rhizomagastrodiae_C368-T10_good_123.070
SRR6049665Rhizomagastrodiae_C368-T10_good_123.070
SRP279888GastroGastrodia elata tuber 20.78
JuvenJuvenile tuber29.43
Mother_GastroMother tuber of Gastrodia elata 33.11
Mother_JuvenMother tuber of Juvenile 33.78