Gene detail

Detail information of GWHGAAEX008486/evm.TU.scaffold_22.41

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743784980\|ref\|XP_010921790.1\|	0	PREDICTED: homeobox protein LUMINIDEPENDENS-like [Elaeis guineensis]
Swissprot	tr\|Q58T20\|LUMI_ARATH	2.00E-169	Homeobox protein LUMINIDEPENDENS
trEMBL	tr\|A0A0A0K948\|A0A0A0K948_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN44902.1}
TAIR	AT4G02560	8.00E-169	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000017	2383382	2407152	+

Transcript Sequence
>GWHTAAEX008486 CCCAGTTACCCAATATTTAAATTTCACTCGAGTGAAACCCTGCTGGCTGGGTGGTCAGAAAAGGCACGCAGCGGCATATCCGCGGCCGAAGAATCCTTGTTCGAGCATTTCGTTCATTGCCGCGCGGCCGTATCTACTGTTTTTCTCCTCCGTTGGCCGCAATTTGCGAAGGAAGTTCCTCTTCCTTTCCCTGTTTCATGCTCCCCCTAACAAACAAATGGGAACCCTAACCCTAGCCCTTCAGCGCATCCCAATTGCGCTTAAATTCTCTCTTCAGAGCCTCTGACGTTTTGTCTTTGCGTCTCGGAACCCAGGCAAGCAATCCACATCACGTCCGGGTTCCTGATGCTCTCCGTTGGGTCTGATTTTACTTTTTGGATCGAAGATGGCCCTTGTTCCGACGAGATTGGAAAATTCTTTACAGGATTTGGGAATAGACGGATCCGTCGAGTCTCTAGGCCAATATCTCGATGCGCAGAAAAGGCTGTTCTACAGCCAGGTAGAGCAGTTGCAGAGACTGGTTGTTACGCAATGCAAGCTCACGGGGGTTAATCCCCTCTCCCAAGAGATGGCTGCTGGTGCCCTATCAATAAAAATTGGAAAAAAGCATCGGGATATGCTTAATCCCAAAGCTGTCAAATACATGCAGTCAGTTTTTGCCATCAAGGATACTATTGGAAAGAAAGAAACCCGTGAGATTAGTGCTCTTTGTGGAGTTACGGTTACACAGGTTAGAGATTTCTTTTCTGGGCAACGATCAAAAGTTAGAAAGCTTATTAGTTTTGCCAGGGAAAAGGCTATCAGGTCAGATGCATCTGATGCAACTAATGAGGGATGCCCTGCTAATCCTGAGGCAGCCCTTTTTTGTAGAAGTGACACGCCTGCAAGTGATGCTGACATCAAGAATATTGCAGAAGTTTCTACTAGCAATTGGAAGTTGCCTGCTTTTCGGTGTTGTGAAAATGTACCTGTGAGTTCAATTGATGCTAAACCTGTTCAAGTGACAGCCCTTTCATCCTCGTCACAGGAAGAATGCATGCTTGCTATGGATGAGGATGATAAAAAAATTCTTGAGAATATTTTCAATTTAATGTGGAAGGAAGGGACATTTTCTGGACAGGTGAAGTTGATGGAATGGATTCTTCAAATCCACAATTCAGCAGTTCTAGTTTGGTTCTTAACTAAAGGTTGCATCGCTATTTTAGCAACATGGCTGAGTGAAGCTGCCATTGAAGAACAAACAACTGTACTTAATGTTATTCTTAAGGTTCTCTGTCACCTGCCCCTACATAAGGCTCTTCCAGCACAAATGTCTACTATCTTGCAGACAGTCAACAAGCTTAGGTTTTACAGGACACAGGACATATCAAACAGGGCAAAGGTTCTCCTCTCTCGGTGGAGTAAAATGCTTGTAAGAAATCATGCTCTGAAACATCCTTCATCAACATTGAATTCTTCCAATGGTGTTCAGAAGGACATTATTAGGAAACAGAGGATAAACGAAATTCTCAGCGACGAATTCTGGCGATCTAAAATTGGCATTACTGAGGAAATTCTTACTCTGACAGAAAATAGTGGGAATGACAGTAAATCAGACCCTAAACAGGCGATGAAGCTGCTTACAGCATCATGTGACAGCCCTAATAAAAAGCACGGTCAAAGTGCTTTATCAATCAAAATAAAAGAACGCAGGAAAGTTCTACTGGTTGAACAGCTTGATCAGAAACCATCCTCAGGGAGGTTTGCACAGGCAGGAAAAGCTGCATCAGCTGCAAATCATAGCCGTCCGTTATCTGCTGATGACATTCAGAAGGCGAAGATGCGGGCCATGTTCATGCAGCACAAGTATGGAAAGGCAGACTCGCCTTCTGCTGCTGAAAACAAGAGAACCGAGGTCAACAAAGACGTACGAGTGCCTCAATCCAAAAAGGATTTACCTGCACCGGTAATAATAACGCAGCAAACGCTTGTGAATAGAGAGGAAGGAAGGCCGGTTAATGGTTTGGAAACTCTGGCCAGCACTCCATTAGCTGGAGATCTCCGGCAAGAGTTGTCTGAGATGGTGAGGGGCGGATTGCTCCAGTGGAGGATGCCCCCAGAGATAAAGCTTGATAGCTCATGGAGGGTCGGCGAGGGCGAAAGCAGCAAGGAGATCGGCATCCAGGTGCAACGCATTCGAAGGGAGAAGGAGACTTTCTATTCGTCCAAACTTGACGTCCCCCCCAATGCCAAAGAGCCATGGGATGTCGAAATGGACTTTGACGACAGCCTGACCCCGGAAATCCCGACCCAGCAGCTTCCGGACTCGGATCCGATCGAGGAGCCCGCCGTTCCGTCTGCTGACGTTCAACAGGCCGCTGTTCCGTCTGCTGACGTTCAACAGGCCGCCGTTCCTGAGGACACGCCGCCGGCCCTAGCTGCGCCCTCTGCCGGCAGCGCTGCAGCGGCTCCCGACCTGGAGCTTCTTGCCATTCTCCTTCAGAATCCAGAGCTCGTATTCGCCCTCACCTCCGGTCAGGGACGAAACCTGACCAGCGATGAGAGAGTCGCGCTTCTCGATATGATCAAGCATAACAACACCGCCTCCTTGGCGAAGGAGCCCCATCCGGTCTCTCTCCCGTCTCCAACTCCACCGTCCGATGCAGAAAGAGCGGCTGGCTGGAGGACGTTGGCGTTTTCCGCCGCACAAACCGGGGTGCAATCCTCTGCAGTAACAGTGAATGCGGCGACTCAAATCCTGGGCTCAGCACCCAGTGCTGAATTCGACTTGCTGTCGAAGAACTATGGTACCGCATGCAGCCGGCCAGCAATGGCTTCCTATCCTCAGGACTCTTATGGAAGAAGCCGTGACACTCTTCTGATGCGTGACATCTACGCTCAGGCCTCTCTATCTCACATCCAGGAGGACGAGCTATTGCTTCAGAGCCGCCTGCACGGCGGCGTTATTGGCGTTTACGAGGATTTTTATCCGACGTATCGCAATACTCCTACAGAACGAGAAGAGACGGCCGCATGCCGATTTACGCAATCGGAAGCTTGGAGTCCCGAAGGCGCAAATGTGAGATCGTCTCGGTTTTGGCAAGGGCAAGGCCGAGGGAACGCAGAGAAGTGGCCGAGGCAACAGCGGAGCGGGTTTGGGGGGAGATGGCGGGATTGGGATCGGAATAGGGATTGGGATCATAGGAGGTAGAGCGGCCTGTGTGCTGTTGTTGTTGTTCAGATGAATTTATCCCAAGTTCCGGAGATGTAGGATAGAGTAGACGATTTGTATAGGAATCCATTTGGATCCCTCCCAAAGGGACTAACATTTTTAATAGGAATCCATTCTCGAGAAAGATTGACAGCTCCTTCTTCTTGTACCTTGTTTTTAAATGCTTTAGTTCCTTTATATGTATACATGTAGTAATATTTAGGGTTATTGAAGAATGACCCAATTAACTAGAAAAATAGCAATATAAGGCAGCATTTCTTTTTGCTAAACGAGATCTAAAACTTGGGCGCATATGGATCTCTTTTTATATGTATGCGTATCTATGTATATATTTATGGTTCCAAGTTTCAAGATTTGTAGAGTACAAGCACATAATATTTTTATTCTAAACAGCATGGCT

Network for GWHGAAEX008486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	73	129	0.00018

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.260
SRP064423	SRR2545915	Juvenile tuber	13.890
SRP108465	SRR5643513	five period of Gastrodia elata	14.090
	SRR5643514	five period of Gastrodia elata	13.500
	SRR5643515	five period of Gastrodia elata	12.620
	SRR5643524	five period of Gastrodia elata	13.110
	SRR5643525	five period of Gastrodia elata	11.970
	SRR5643528	five period of Gastrodia elata	11.220
	SRR5643658	five period of Gastrodia elata	11.290
	SRR5643659	five period of Gastrodia elata	13.960
	SRR5643660	five period of Gastrodia elata	15.750
	SRR5643661	five period of Gastrodia elata	14.680
	SRR5643662	five period of Gastrodia elata	14.720
	SRR5643663	five period of Gastrodia elata	13.380
	SRR5643664	five period of Gastrodia elata	15.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.560
SRP279888	Gastro	Gastrodia elata tuber	21.73
	Juven	Juvenile tuber	26.67
	Mother_Gastro	Mother tuber of Gastrodia elata	26.30
	Mother_Juven	Mother tuber of Juvenile	22.94