Detail information of GWHGAAEX008487/evm.TU.scaffold_22.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 1.00E-29 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|743763387|ref|XP_010911875.1| | 0 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Elaeis guineensis] |
| Swissprot | tr|Q9XID3|Y1343_ARATH | 0 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (Precursor) |
| trEMBL | tr|I1GL44|I1GL44_BRADI | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT1G34300 | 0 | lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000017 | 2698718 | 2702010 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008487
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 109 | 183 | 4.10E-17 |
| PF00954.19 | S_locus_glycop | 262 | 323 | 1.20E-06 |
| PF00069.24 | Pkinase | 519 | 785 | 1.60E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_SD-2b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.410 |
| SRR2545915 | Juvenile tuber | 9.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.280 |
| SRR5643514 | five period of Gastrodia elata | 10.410 | |
| SRR5643515 | five period of Gastrodia elata | 8.720 | |
| SRR5643524 | five period of Gastrodia elata | 10.110 | |
| SRR5643525 | five period of Gastrodia elata | 9.720 | |
| SRR5643528 | five period of Gastrodia elata | 6.270 | |
| SRR5643658 | five period of Gastrodia elata | 9.750 | |
| SRR5643659 | five period of Gastrodia elata | 20.980 | |
| SRR5643660 | five period of Gastrodia elata | 25.930 | |
| SRR5643661 | five period of Gastrodia elata | 20.070 | |
| SRR5643662 | five period of Gastrodia elata | 14.990 | |
| SRR5643663 | five period of Gastrodia elata | 20.270 | |
| SRR5643664 | five period of Gastrodia elata | 20.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.24 |
| Juven | Juvenile tuber | 29.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.85 | |
| Mother_Juven | Mother tuber of Juvenile | 14.65 |