Detail information of GWHGAAEX008489/evm.TU.scaffold_22.45


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34128.00E-6560S ribosomal protein L28
nrgi|743797271|ref|XP_010924940.1|5.98E-73PREDICTED: 60S ribosomal protein L28-2-like [Elaeis guineensis]
Swissprottr|Q9M0E2|RL282_ARATH2.00E-6560S ribosomal protein L28-2
trEMBLtr|B3TLS3|B3TLS3_ELAGV2.00E-7360S ribosomal protein L28 {ECO:0000313|EMBL:ACF06504.1}
TAIRAT4G294108.00E-65Ribosomal L28e protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001729921892999165+
Transcript Sequence

Network for GWHGAAEX008489

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01778.16Ribosomal_L28e81281.00E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02903RP-L28e, RPL28 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms117.920
SRR2545915Juvenile tuber136.970
SRP108465SRR5643513five period of Gastrodia elata83.080
SRR5643514five period of Gastrodia elata100.810
SRR5643515five period of Gastrodia elata88.600
SRR5643524five period of Gastrodia elata86.110
SRR5643525five period of Gastrodia elata75.050
SRR5643528five period of Gastrodia elata73.590
SRR5643658five period of Gastrodia elata58.950
SRR5643659five period of Gastrodia elata115.870
SRR5643660five period of Gastrodia elata101.900
SRR5643661five period of Gastrodia elata111.280
SRR5643662five period of Gastrodia elata108.250
SRR5643663five period of Gastrodia elata119.450
SRR5643664five period of Gastrodia elata103.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1143.220
SRR6049655Rhizomagastrodiae_C368-T10_good_1177.280
SRR6049656Rhizomagastrodiae_C368-T07_good_1161.590
SRR6049657Rhizomagastrodiae_C368-T07_good_1133.560
SRR6049658Rhizomagastrodiae_C368-T04_good_1186.770
SRR6049659Rhizomagastrodiae_C368-T04_good_1178.760
SRR6049660Rhizomagastrodiae_C368-T01_good_1181.030
SRR6049661Rhizomagastrodiae_C368-T04_good_1175.510
SRR6049662Rhizomagastrodiae_C368-T01_good_1217.690
SRR6049663Rhizomagastrodiae_C368-T01_good_1215.970
SRR6049664Rhizomagastrodiae_C368-T10_good_1163.320
SRR6049665Rhizomagastrodiae_C368-T10_good_1163.320
SRP279888GastroGastrodia elata tuber 223.83
JuvenJuvenile tuber71.17
Mother_GastroMother tuber of Gastrodia elata 67.30
Mother_JuvenMother tuber of Juvenile 48.74