Gene detail

Detail information of GWHGAAEX008490/evm.TU.scaffold_22.49

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743776475\|ref\|XP_010918646.1\|	0	PREDICTED: uncharacterized protein LOC105042963 [Elaeis guineensis]
trEMBL	tr\|F6I4K1\|F6I4K1_VITVI	3.00E-174	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61838.1}
TAIR	AT1G09040	6.00E-88	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000017	3092730	3125987	-

Transcript Sequence
>GWHTAAEX008490 ATGATGGATGTTTGTGAGCAAGGAACTAGTGGAAATCATGCTGCAGAGCCATTTGATGAAGATTCACTCTCTTCATGTTTGCCTGAAATCAGTGATATATTCGAAGAATCTGTTTTGTTTCCTCGTGTAGGAGAGCAATATCAAGTTGAAATTCCACAACATGAAACCAAATCAGAGCTCTCACAAATCATAACATCCTCATATGATAATACCAAAATCTCAGTCTACGATGAATTTGGAATAGGACTGGCTATTCCTGTTAAATGGGTTCAGTACCCTGGTTATGATATCAAGATCAATAGTGAAAAAGAAGAAATTTCAAATGCAAGTGTTGTTCCTGATATTGAAGGATCATCACATTTTCCAAATTATAATGATACGCATGCTGATTTTAAATTAAACTTTCGTGGATCTGCTCTTGAAAACCACCAAAAGCTTACTTTTAAACACCTTCAAAGAAGTGCATGCAAAGTTGATTTTTTGGATTCAACAGTTCAGGATAATCATGTTGCATATTCAGCAAATCATGTGACATGCGATAATGATCATAAGGACTACTGCTCAACTTTGATGCAGAGCAGGAAAGCTGGGGTTTTTTATCCATTTCCTGGTTTGCCAACTTTATCTTGGAGTGATGAAGAGAAACAAAGCTTTCTTCTAGGCCTTTATATTTTTGGAAAAAATCTTATTCAGGTTAAAAAATTTATGGAGACTCAAGGGATGGGAGATGTATTATCATTCTATTATGGAAAATTTTATAGATCTGATGCACACCGCAGATGGTCAGAGTGTAGAAAGATCAGAAGTAGGAGATCAATACACGGACAACGAATATTTACAGGTTGGAGGCAACAAGAACTCCTATCACGCATATTAAATAGTGCACCCAAGGATCTTCATGATACTTTACGTGAGGCTGCCAAGGCATTTAATGATGGCAGAGCTACTTTAGAAGAATTTGTCTTTAAACTCAAGGCTGCAGTTGGTCTACAAGCTTTGGTAGATGCTATTGGAATTGGCAAGGGGACACATGACCTTACTGGAGTAGTTATGGATCATGCCAGAACAAACCCAACCATTCCTGTACACCCTGAGATACCTGTTGGGAGGGCATGCTCCTCTCTCACCTCTGCAGATATTATTAAGTTTCTTACAGGAGATTTCAGGCTCAGCAAAGCGAGGTCAAATGATCTTTTCTGGGAGGCCGTTTGGCCCCGTCTTCTAGAAAGGGGTTGGCACTCCGAGCAGCCCAAAGACCATGGCCCTTTGCGCTCCAAGACTTCTCTTGTATTCCTTATTCCCGGTGTTAAGAAGTTCTCTAGGAAGAGACTTGTCAAGGGGACCCATTTTTTCGATTCAGTGAGCGATGTCTTGAGCAAAGTGGCATCAGATCCTAGGCTTCTTGAGTTAGATGCTGAAGCAGTGAAATGCTCTAGCAGCATCAAAGAAGAAAATGGATGGAATTTAAATATTAAGGAATTCCGAAATGGTTCTTCCAAACAGCAACCTCATTGCTACCTGCACCCAAGACCCCCGAGCTGCACATCCGAACGCTTGAAATTTACTGTTGTCGATACCAGTTTGGTTCAATGTGAAGGATCCTTCAAGGTGATGGAAGTAAGGAGTTTTCCCTCTGGTACTGCCCCAAACTACTGTGGCTCGTCAGATGATTCTAGGAGCGAAACCTCATCGGAAACCGAAAATTCTACCAATACTTCCGATGATGAAAACTCCAATCCAGTCTCATCTTCCGAGAAGAAACCCGAAGACAATCAAGCAACGCAGTCCAAACTCTCTAAAAACTTATTACCTTTTGTAAATGCTGTTACTACTAATGGATATGCTGCAACTGATAAATACATGGTAAAGGTGAAAGATGACAAGTCAGGGTGTCAGCACAGCCGTAGGGTAAAATCAGGCCAATCAAACTGTTCTACTCCCGCAATGAAACGGAGGAAAATTACTGGTTGTTCAAGAGGAACTGATCGCCCTACCTGCTCTGTCGTAAAACAAATTCAGCAAGATAATCCGCAGACAAACTCAAAACTTGATCTCCTTAAAGTTGCCAACACCCTCTTTTCAAATGTGAGTGAATCCCAAGAGAAAGTAAATCTTTACCACTATCATCATGCTAATAAGGCCTTCACAAATTTGCCGGAGGAAAAGCGACAATCTCGAACATTTTTCGACCTCAATGATCTTCCGCCTGATGCTGATGCTGCTGATTCTTCAAGTAACGAATTAAAATCTGAAGATTTGTTGCAATCTTCATCGGGAAAACATCTCATGGATAACCGAGCATCGATGCAAGAGTGCATTGACGAGCAGCAATCAGTGGGGATTCGAAGACACAGCACGAGGAATCGTCCTCCAACCGCAAAAGCATTGGAAGCTCTTGCAAGCGGGCTTCTTGGCACCAAGCGGTCATGGAGACCGCCCAATTCGACGAGCAGGCCTAATTCTCGGAAGTCTCGGAAAACATATGAGGAGCCTGATTCTGCAGCTGTAGCCATCTTTGGCAATGTTGGGCCTAACACCTTGAGCATGAGTTTTACGGAAATAGTTCACAGGGAATATGAGGAGAGTGAGAGGAAAGGAACTCATGAGCTTCTTGGTGTTCCTTAG

Network for GWHGAAEX008490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.020
SRP064423	SRR2545915	Juvenile tuber	15.550
SRP108465	SRR5643513	five period of Gastrodia elata	9.820
	SRR5643514	five period of Gastrodia elata	9.360
	SRR5643515	five period of Gastrodia elata	8.290
	SRR5643524	five period of Gastrodia elata	9.350
	SRR5643525	five period of Gastrodia elata	7.080
	SRR5643528	five period of Gastrodia elata	6.400
	SRR5643658	five period of Gastrodia elata	6.650
	SRR5643659	five period of Gastrodia elata	8.530
	SRR5643660	five period of Gastrodia elata	8.250
	SRR5643661	five period of Gastrodia elata	9.210
	SRR5643662	five period of Gastrodia elata	8.120
	SRR5643663	five period of Gastrodia elata	7.450
	SRR5643664	five period of Gastrodia elata	7.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.270
SRP279888	Gastro	Gastrodia elata tuber	8.59
	Juven	Juvenile tuber	8.99
	Mother_Gastro	Mother tuber of Gastrodia elata	7.96
	Mother_Juven	Mother tuber of Juvenile	8.03