Detail information of GWHGAAEX008492/evm.TU.scaffold_22.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34126.00E-6560S ribosomal protein L28
nrgi|743797271|ref|XP_010924940.1|1.01E-72PREDICTED: 60S ribosomal protein L28-2-like [Elaeis guineensis]
Swissprottr|Q9M0E2|RL282_ARATH2.00E-6560S ribosomal protein L28-2
trEMBLtr|B3TLS3|B3TLS3_ELAGV4.00E-7360S ribosomal protein L28 {ECO:0000313|EMBL:ACF06504.1}
TAIRAT4G294106.00E-65Ribosomal L28e protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001735222393529228-
Transcript Sequence

Network for GWHGAAEX008492

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01778.16Ribosomal_L28e81285.10E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02903RP-L28e, RPL28 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.420
SRR2545915Juvenile tuber73.890
SRP108465SRR5643513five period of Gastrodia elata156.140
SRR5643514five period of Gastrodia elata176.310
SRR5643515five period of Gastrodia elata156.480
SRR5643524five period of Gastrodia elata152.300
SRR5643525five period of Gastrodia elata124.670
SRR5643528five period of Gastrodia elata127.190
SRR5643658five period of Gastrodia elata98.440
SRR5643659five period of Gastrodia elata211.560
SRR5643660five period of Gastrodia elata210.770
SRR5643661five period of Gastrodia elata219.220
SRR5643662five period of Gastrodia elata212.300
SRR5643663five period of Gastrodia elata218.770
SRR5643664five period of Gastrodia elata197.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1133.600
SRR6049655Rhizomagastrodiae_C368-T10_good_1175.890
SRR6049656Rhizomagastrodiae_C368-T07_good_1135.040
SRR6049657Rhizomagastrodiae_C368-T07_good_1133.220
SRR6049658Rhizomagastrodiae_C368-T04_good_193.730
SRR6049659Rhizomagastrodiae_C368-T04_good_189.820
SRR6049660Rhizomagastrodiae_C368-T01_good_1102.640
SRR6049661Rhizomagastrodiae_C368-T04_good_184.040
SRR6049662Rhizomagastrodiae_C368-T01_good_1119.880
SRR6049663Rhizomagastrodiae_C368-T01_good_199.330
SRR6049664Rhizomagastrodiae_C368-T10_good_1211.600
SRR6049665Rhizomagastrodiae_C368-T10_good_1211.600
SRP279888GastroGastrodia elata tuber 279.45
JuvenJuvenile tuber175.50
Mother_GastroMother tuber of Gastrodia elata 102.42
Mother_JuvenMother tuber of Juvenile 112.77