Detail information of GWHGAAEX008495/evm.TU.scaffold_22.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1677 | 1.00E-135 | CCCH-type Zn-finger protein |
| nr | gi|672144660|ref|XP_008796231.1| | 0 | PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q84W91|C3H32_ARATH | 9.00E-145 | Zinc finger CCCH domain-containing protein 32 |
| trEMBL | tr|M0TP53|M0TP53_MUSAM | 5.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P10000_001} |
| TAIR | AT2G47850 | 1.00E-135 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000017 | 3835757 | 3863751 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008495
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 49 | 72 | 2.60E-08 |
| PF00642.23 | zf-CCCH | 96 | 120 | 1.00E-09 |
| PF00642.23 | zf-CCCH | 142 | 166 | 5.90E-07 |
| PF00642.23 | zf-CCCH | 299 | 324 | 4.80E-10 |
| PF00642.23 | zf-CCCH | 347 | 370 | 7.10E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.950 |
| SRR2545915 | Juvenile tuber | 13.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.890 |
| SRR5643514 | five period of Gastrodia elata | 14.120 | |
| SRR5643515 | five period of Gastrodia elata | 21.080 | |
| SRR5643524 | five period of Gastrodia elata | 16.350 | |
| SRR5643525 | five period of Gastrodia elata | 16.580 | |
| SRR5643528 | five period of Gastrodia elata | 21.750 | |
| SRR5643658 | five period of Gastrodia elata | 16.650 | |
| SRR5643659 | five period of Gastrodia elata | 24.470 | |
| SRR5643660 | five period of Gastrodia elata | 27.550 | |
| SRR5643661 | five period of Gastrodia elata | 29.390 | |
| SRR5643662 | five period of Gastrodia elata | 32.140 | |
| SRR5643663 | five period of Gastrodia elata | 25.610 | |
| SRR5643664 | five period of Gastrodia elata | 23.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.05 |
| Juven | Juvenile tuber | 26.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.42 | |
| Mother_Juven | Mother tuber of Juvenile | 21.69 |