Detail information of GWHGAAEX008502/evm.TU.scaffold_22.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19952.00E-10Conserved Zn-finger protein
nrgi|743842923|ref|XP_010937932.1|4.96E-115PREDICTED: transcription initiation factor TFIID subunit 15b-like isoform X1 [Elaeis guineensis]
Swissprottr|Q94KD0|TA15B_ARATH2.00E-10Transcription initiation factor TFIID subunit 15b
trEMBLtr|A0A061H0D4|A0A061H0D4_THECC3.00E-99TBP-associated factor 15B isoform 1 {ECO:0000313|EMBL:EOY34589.1}
TAIRHS48852252.00E-10Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001750274745061454+
Transcript Sequence

Network for GWHGAAEX008502

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00641.17zf-RanBP66971.30E-08
PF00076.21RRM_13303591.20E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.290
SRR2545915Juvenile tuber42.310
SRP108465SRR5643513five period of Gastrodia elata77.200
SRR5643514five period of Gastrodia elata58.360
SRR5643515five period of Gastrodia elata69.530
SRR5643524five period of Gastrodia elata68.120
SRR5643525five period of Gastrodia elata53.470
SRR5643528five period of Gastrodia elata59.870
SRR5643658five period of Gastrodia elata40.840
SRR5643659five period of Gastrodia elata81.600
SRR5643660five period of Gastrodia elata82.440
SRR5643661five period of Gastrodia elata82.540
SRR5643662five period of Gastrodia elata79.810
SRR5643663five period of Gastrodia elata68.800
SRR5643664five period of Gastrodia elata73.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.310
SRR6049655Rhizomagastrodiae_C368-T10_good_142.590
SRR6049656Rhizomagastrodiae_C368-T07_good_153.990
SRR6049657Rhizomagastrodiae_C368-T07_good_161.970
SRR6049658Rhizomagastrodiae_C368-T04_good_155.640
SRR6049659Rhizomagastrodiae_C368-T04_good_164.930
SRR6049660Rhizomagastrodiae_C368-T01_good_156.400
SRR6049661Rhizomagastrodiae_C368-T04_good_149.540
SRR6049662Rhizomagastrodiae_C368-T01_good_157.100
SRR6049663Rhizomagastrodiae_C368-T01_good_163.880
SRR6049664Rhizomagastrodiae_C368-T10_good_159.270
SRR6049665Rhizomagastrodiae_C368-T10_good_159.270
SRP279888GastroGastrodia elata tuber 90.50
JuvenJuvenile tuber78.81
Mother_GastroMother tuber of Gastrodia elata 65.07
Mother_JuvenMother tuber of Juvenile 61.55