Detail information of GWHGAAEX008504/evm.TU.scaffold_22.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434385707|ref|YP_007096318.1| | 7.00E-22 | leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605] |
| KOG | KOG0619 | 2.00E-88 | FOG: Leucine rich repeat |
| nr | gi|743781865|ref|XP_010920998.1| | 5.16E-158 | PREDICTED: plant intracellular Ras-group-related LRR protein 8 [Elaeis guineensis] |
| Swissprot | tr|Q7XDQ7|PIRL8_ORYSJ | 2.00E-144 | Plant intracellular Ras-group-related LRR protein 8 |
| trEMBL | tr|M0SWH0|M0SWH0_MUSAM | 1.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P07410_001} |
| TAIR | AT2G30100_2 | 2.00E-88 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000017 | 5449537 | 5502338 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008504
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00240.22 | ubiquitin | 22 | 92 | 3.10E-13 |
| PF13855.5 | LRR_8 | 146 | 195 | 1.80E-06 |
| PF13855.5 | LRR_8 | 256 | 313 | 4.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.940 |
| SRR2545915 | Juvenile tuber | 38.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.180 |
| SRR5643514 | five period of Gastrodia elata | 21.380 | |
| SRR5643515 | five period of Gastrodia elata | 19.300 | |
| SRR5643524 | five period of Gastrodia elata | 22.560 | |
| SRR5643525 | five period of Gastrodia elata | 18.300 | |
| SRR5643528 | five period of Gastrodia elata | 20.920 | |
| SRR5643658 | five period of Gastrodia elata | 19.610 | |
| SRR5643659 | five period of Gastrodia elata | 23.940 | |
| SRR5643660 | five period of Gastrodia elata | 27.050 | |
| SRR5643661 | five period of Gastrodia elata | 28.960 | |
| SRR5643662 | five period of Gastrodia elata | 19.810 | |
| SRR5643663 | five period of Gastrodia elata | 23.070 | |
| SRR5643664 | five period of Gastrodia elata | 18.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.32 |
| Juven | Juvenile tuber | 56.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.77 | |
| Mother_Juven | Mother tuber of Juvenile | 40.54 |