Gene detail

Detail information of GWHGAAEX008512/evm.TU.scaffold_22.107

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|284031577\|ref\|YP_003381508.1\|	2.00E-47	ATP-dependent helicase HrpA [Kribbella flavida DSM 17836]
KOG	KOG0920	0	ATP-dependent RNA helicase A
nr	gi\|672132559\|ref\|XP_008789865.1\|	0	PREDICTED: zinc finger CCCH domain-containing protein 4 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q1EHT7\|C3H4_ORYSJ	0	Zinc finger CCCH domain-containing protein 4
trEMBL	tr\|A0A067H8E6\|A0A067H8E6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO87230.1}
TAIR	AT2G47680	0	zinc finger (CCCH type) helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000017	7496014	7590866	+

Transcript Sequence
>GWHTAAEX008512 TCAACAGTAGGAATGGGTTCGGCAGCCGAAGCCTCACCTTCAGCATATTCTGATGATAATCGCCGGCCGCCTCTGCCGATAATGGCTTTCCGGGAGAAGATAGTGGAGAAGGTTCGAGAAAATCGCGTAACCTTAATTGTCGGGGAGACTGGATGTGGGAAAAGCTCTCAGGTTCCTCTCTTTCTTCTTGAAGAAAATATGCAACCTATTTTGTGTACGCAGCCAAGGCGGTTTGCTGTAGTTACAATTGCAAGAATGGTTGCTAAATTCAGAAACTGTGATGTAGGAGATGAGGTCGGTTATCATATTGGCCATGCCAATGTTTCGGATAAAACATCTTCAAGGTCAAAAATTGTTTTCAAAACTGCCGGTGTAGTGTTGGAGCAAATGCGAGATAAAGGATTGGCTGCCTTGAAATACAAGGTTATAATTCTTGATGAAGTACATGAGCGGTCTGTGGAGTCTGATCTTGTTCTTGCTTGTGTCAAACAATTTATGTTGAAAAATAAGGATATGAGGGTTGTGTTGATGTCTGCTACAGCTGATATTTTAAGATATCGGGATTATTTCAAAGATCTTGGTAAGGGTGACAGGGTTGAAGTAATTGCCATTCCAACTGCACCTCGGAATGACATCTTTCAGAGAAAAGTCTTATATCTTGAACAGGTTACACAGCTACTTGAAATTAGTAAACATGATTTATTGCTTCGATACTGCTCGGGAACAGACCCTGATGCCAAAGCTGACCTGAATCCAGAAATTCATGCTCTTATACACAAGCTAATTTTGTTCATCAATGAAACTGAGCCGGATATTGAGAAGAGCCTGCTTGTTTTCCTCCCAACTTATCATGCTTTAGAGCAGCAATGGATCCTTTTGAGACCCTTTCGTTCAGTTTTCAGAGTTCATATTCTTCATCGCAGTATTGACACTGATCAAGCACTCCTGGCCATGCAAACTTGCAAATCTCACCGAAAGGTGATACTTGCCACAAATATTGCTGAATCATCAGTCACTATCCCGGGTGTGGCTTTCGTCATAGATTCATGCAGATCCTTACAAGTCTTTTGGGATTCTGATAGAAAAAATGATTCTTCTGAGCTTGTTTGGGTGTCAAAATCTCAGGCAGAACAACGTAAAGGTAGGACTGGCAGAACTTGTGATGGTTTGGTTTATCGTCTGGTCACTGGATCATTTTACAACCATATGCAAGATCATGATTTCCCATCTATATTAAGACTATCATTGAGACAACAGGTGCTCATGATTTGCTGTGCTGAATCTAAAGTTATGAATGATCCAAAAGGGTTGTTACAGAAGGTTCTTGATCCACCGGATCCTGAAACTGTTGATGATGCTCTCAAATTGCTTGTTCATATTAATGCACTGGAAAAAGTTCGTTCTCAAAAGGGTCGCTATGAGCCAACATTCTATGGTCGCTTGCTGGATAACATGCCATTATCTTTTGATGCTTCACTACTTGCACTCAAATTTGGTGAGATTGGATATTTAAGAGAAGGAATTTTAATCAGCATTTTAATGGATACCCAGCCTCTGCCCATATTGCAACCTTTTGGGCAACAAAACTTGTGTACACATCATGTGAACAGCTTCTTTGAGGGAAAGAATAGCACCTTTCTGCAAAATGGAAAAAAAGAGTCATTGTTTGTGGCAAATTTATGTTCCTACCAATTTTGGCAGCGTGTTTTTAAGGATAAGTTCCGTCTGGAACGATTAAAGCAGGTTGTCAAAGTTGATGATGTCAAAACAACAAGAACTTTAATCTCTAAGCTGGAAGAGGAATGGTGCTTGTTTCATAATCTTTTGTGTGGGTCACTGCATAACATCTCTGAGATCTATGAAGATATAATCAATGGTTTGCACCGTTTTCGTCCAGATTTTCTTGTTAGCAATGATTTTCCAACTTATCATGAGCCATATACATTTAAGCATACTTGTCTTTTGCAATTCAAGTTATTTAAGGATGGTGATGGCAATGTAATTAACGAGGTTGATGATTCTTATGCCAGTGAAATTAGAGACTCTTCTGGTGCAGCAAGTTGTCTTGCTGCACCCTTTGTTGCTCCAGGAAACTTTCAGTCTGAAACAATTGCTGAGAAGTTCAAGGATATAATAAAAGAAATTAAGATGCTGTATTTAGATGATACTATTGAGTCTCAAGGTGATACTATCAGTGGTATCATCTCAAATCCAACGAAAGAAGCTATGTGCAAATTCTTTGTTAATGGAGGATGCAACCGGGGTGCTGAATGCCATTACTCTCATTCACTTCAGGCCAGCAAACCGTTAACAATTGATACTATCAGTGGTATCATCTCAAAGTCAATGGAAGCAACTATGTGTAAATTCTTTTTTAATGGAGGATGCAATCGAGGTGCTGAATGCCATTACTCTCACTCACTTCAGGCCAGCAAACCTTTATGCAAATTTTTTCTTAGTTTACAGGGATGCCGTTATGGAGAATCTTGTTTCTATTTGCATGATTATGGCCCCAGGAATTTGTATAGTTCTTCATCCAATGCCTGTTTTCAAGAAGATGATGATACTTCTGCTCATTCTTTTCTTCAACTACTGCCATCAACCGATGATGATTGTGTACTTGTGCTAAATGATAAAAATTTACATTTTACATCGAATCTTTCAAAGTACTTTAGTCCAACAAAGATAATTGCTACAACTTCACTTTCAGATTCTTCAGATATATATGATTTTCCAGCTGCAGTCAGGGTACTATGGAATGTTAAACATCCTCATCAATCTATTTTTGAAAGTAAAGGAAATTCCTCTATCCCTTGGAAAGATGTCAACTCAGTATTGTGGTTTGTTGATTCTAAGGCAGGGGATTCAGAAATTTATTTTAGTGAGCTGAAAAACTTTATTGAGCATCTTGCTGTTCGTATCTTGGCTGACGGCTTATCTAAAATTCACCCAATTATCATAATGAACAACATCAGGTTTGCCCAGTGTCAGGTGGAGAGACTGGCCCGGGATTGCTTCTTTTTTCTTACCGAGTCGGTCCCATTTGACGAACTGACTTTCGGCATGTTCTCTGATTTCTGTGGGATTGCGAGGCCATTGCAGGTCTGCAGGCCTATCTGCTATGCCTTTGAAATGATTCCACCAACTGATATCCAATTTGGTGATTATAGCGCTGCACTTCGCAAGGGTCTATACAGCAATCAGTGAAAAGGTTGTGCTTGTGGGGCTCTTTTCTTAACCTAATTTTGTACAGGTCCTATTCATCTTATGCCGTCACCATTGAGCTCTAGTTTAAGATTTGTAGTATATAAATAGGTCAGGCTGGGTTAACTGTCTGCCTCAAGTTTTGTTTATTAATATGTTTAGGTTTGTGTTACCATTAGCCTGAAAGTTTGTTTATTTCTGTTTTACATTTTTAGCACTTGTTAAAAGCAGGTCGTGCTATAATTATGGACTTTTAATTAGCTCATTGAAACCAAGTTTAAGCTATATATGATTGCCCCGTTTTGATTTAATTAGGCATCAAAATATAAAATTAGCC

Network for GWHGAAEX008512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	28	177	2.70E-08
PF00271.30	Helicase_C	264	382	9.70E-12
PF14608.5	zf-CCCH_2	740	758	0.039
PF14608.5	zf-CCCH_2	784	802	0.94
PF14608.5	zf-CCCH_2	811	830	0.33

Protein Sequence

>GWHPAAEX008512
MGSAAEASPSAYSDDNRRPPLPIMAFREKIVEKVRENRVTLIVGETGCGKSSQVPLFLLEENMQPILCTQPRRFAVVTIARMVAKFRNCDVGDEVGYHIGHANVSDKTSSRSKIVFKTAGVVLEQMRDKGLAALKYKVIILDEVHERSVESDLVLACVKQFMLKNKDMRVVLMSATADILRYRDYFKDLGKGDRVEVIAIPTAPRNDIFQRKVLYLEQVTQLLEISKHDLLLRYCSGTDPDAKADLNPEIHALIHKLILFINETEPDIEKSLLVFLPTYHALEQQWILLRPFRSVFRVHILHRSIDTDQALLAMQTCKSHRKVILATNIAESSVTIPGVAFVIDSCRSLQVFWDSDRKNDSSELVWVSKSQAEQRKGRTGRTCDGLVYRLVTGSFYNHMQDHDFPSILRLSLRQQVLMICCAESKVMNDPKGLLQKVLDPPDPETVDDALKLLVHINALEKVRSQKGRYEPTFYGRLLDNMPLSFDASLLALKFGEIGYLREGILISILMDTQPLPILQPFGQQNLCTHHVNSFFEGKNSTFLQNGKKESLFVANLCSYQFWQRVFKDKFRLERLKQVVKVDDVKTTRTLISKLEEEWCLFHNLLCGSLHNISEIYEDIINGLHRFRPDFLVSNDFPTYHEPYTFKHTCLLQFKLFKDGDGNVINEVDDSYASEIRDSSGAASCLAAPFVAPGNFQSETIAEKFKDIIKEIKMLYLDDTIESQGDTISGIISNPTKEAMCKFFVNGGCNRGAECHYSHSLQASKPLTIDTISGIISKSMEATMCKFFFNGGCNRGAECHYSHSLQASKPLCKFFLSLQGCRYGESCFYLHDYGPRNLYSSSSNACFQEDDDTSAHSFLQLLPSTDDDCVLVLNDKNLHFTSNLSKYFSPTKIIATTSLSDSSDIYDFPAAVRVLWNVKHPHQSIFESKGNSSIPWKDVNSVLWFVDSKAGDSEIYFSELKNFIEHLAVRILADGLSKIHPIIIMNNIRFAQCQVERLARDCFFFLTESVPFDELTFGMFSDFCGIARPLQVCRPICYAFEMIPPTDIQFGDYSAALRKGLYSNQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.410
SRP064423	SRR2545915	Juvenile tuber	15.460
SRP108465	SRR5643513	five period of Gastrodia elata	5.360
	SRR5643514	five period of Gastrodia elata	5.420
	SRR5643515	five period of Gastrodia elata	4.070
	SRR5643524	five period of Gastrodia elata	4.060
	SRR5643525	five period of Gastrodia elata	1.700
	SRR5643528	five period of Gastrodia elata	1.210
	SRR5643658	five period of Gastrodia elata	1.550
	SRR5643659	five period of Gastrodia elata	5.800
	SRR5643660	five period of Gastrodia elata	4.680
	SRR5643661	five period of Gastrodia elata	5.190
	SRR5643662	five period of Gastrodia elata	4.160
	SRR5643663	five period of Gastrodia elata	5.220
	SRR5643664	five period of Gastrodia elata	4.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.690
SRP279888	Gastro	Gastrodia elata tuber	5.99
	Juven	Juvenile tuber	5.33
	Mother_Gastro	Mother tuber of Gastrodia elata	2.73
	Mother_Juven	Mother tuber of Juvenile	4.42