Detail information of GWHGAAEX008513/evm.TU.scaffold_220.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4299 | 4.00E-79 | PHD Zn-finger protein |
| nr | gi|743872749|ref|XP_010906632.1| | 4.34E-129 | PREDICTED: homeobox protein HOX1A isoform X2 [Elaeis guineensis] |
| Swissprot | tr|P46605|HOX1A_MAIZE | 5.00E-101 | Homeobox protein HOX1A |
| trEMBL | tr|Q8H990|Q8H990_ORYSJ | 4.00E-124 | PHD-finger family homeodomain protein {ECO:0000313|EMBL:BAC15622.1} (Fragment) |
| trEMBL | tr|Q8H990|Q8H990_ORYSJ | 8.00E-14 | PHD-finger family homeodomain protein {ECO:0000313|EMBL:BAC15622.1} (Fragment) |
| trEMBL | tr|Q8H990|Q8H990_ORYSJ | 5.00E-07 | PHD-finger family homeodomain protein {ECO:0000313|EMBL:BAC15622.1} (Fragment) |
| TAIR | AT3G19510_2 | 4.00E-79 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000215 | 34880 | 86022 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008513
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00628.28 | PHD | 256 | 311 | 4.10E-11 |
| PF00046.28 | Homeobox | 707 | 747 | 4.80E-12 |
| PF00046.28 | Homeobox | 834 | 874 | 8.10E-11 |
| PF00046.28 | Homeobox | 933 | 976 | 3.80E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-PHD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.980 |
| SRR2545915 | Juvenile tuber | 45.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.120 |
| SRR5643514 | five period of Gastrodia elata | 39.170 | |
| SRR5643515 | five period of Gastrodia elata | 39.610 | |
| SRR5643524 | five period of Gastrodia elata | 39.140 | |
| SRR5643525 | five period of Gastrodia elata | 32.960 | |
| SRR5643528 | five period of Gastrodia elata | 35.170 | |
| SRR5643658 | five period of Gastrodia elata | 33.970 | |
| SRR5643659 | five period of Gastrodia elata | 42.710 | |
| SRR5643660 | five period of Gastrodia elata | 43.330 | |
| SRR5643661 | five period of Gastrodia elata | 40.700 | |
| SRR5643662 | five period of Gastrodia elata | 41.120 | |
| SRR5643663 | five period of Gastrodia elata | 39.720 | |
| SRR5643664 | five period of Gastrodia elata | 36.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 45.29 |
| Juven | Juvenile tuber | 49.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.64 | |
| Mother_Juven | Mother tuber of Juvenile | 45.50 |