Gene detail

Detail information of GWHGAAEX008516/evm.TU.scaffold_220.4

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1999	2.00E-165	RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5
nr	gi\|743759668\|ref\|XP_010933212.1\|	0	PREDICTED: hornerin isoform X4 [Elaeis guineensis]
Swissprot	tr\|Q9STN3\|SPT51_ARATH	1.00E-61	Putative transcription elongation factor SPT5 homolog 1
trEMBL	tr\|M0TI86\|M0TI86_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P16990_001}
TAIR	AT5G04290	2.00E-165	kow domain-containing transcription factor 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000215	119492	144752	+

Transcript Sequence
>GWHTAAEX008516 ATGGCGGTCAAGGGCAAAGGGAAGCAGATCGCCGGAAAGTCTCCGGCATCTTCTTCATCTCCTTCTGCAAAGAGGAAGGATTCTTGCGCACGCGGCGAGGGCTCTGATGCCCAGCCAAACAAGAGGCGCTCCGGCGTCTCACAATTCGTTGACGATACCGCAGTGGACGCTGATTTTGTAGCAGAGGAAGAAGAAGAGGAGGATGAGCTCGACTGGGAAATTGACGAGGACTTCGACTTTGAGTTACCTGATATTGGTATTAAAGAGGTAAAAAATGCTACAAAGGAATCTGTAAATTCCTCTTCGCTTCCTTTTTTTATTAAGGAGGAAGAAATGAATAATGATGAACTTGAAGAAGCAATCAAGGAGCGGTATCGTGGTTCAGAATTTGTTTCATTTGATGAAGATATTAAAGAGTGTGTTAATCCTGAATTGGTAGCCTATACTACAAAAGATCTCTTTATTTGGAGGGTTAAATGCATGATGGGGCGAGAAAGGCAAGCTGCTTTTTGCTTAATGCAAAAATTTGTTGACCTGCTGAAAATTGGAAAGACACTGCAGATATTTTCTGTATTTGCTCTTGATCATGTGAAGGGCTTTGTTTATGTTGAAGCAGATAAGGCCTCAAATGTTTTTGAGGCATGCCATGGGCTGTGCATTTTGTACCCAAGCAGAATAGATCTTGTTCCAAGGAATGAAATACCTAATTTACTTTCTATTCAAAAAAAAACATGTGGAATTTCCAAGGGCATGTGGGTTCGAATGAAGAGTGGAAAGTACAAGGGTGATCTTGCTGAGGTTGTGTTTGTAAATGATACAAAGAAAAGGGTGACCATTAAACTGGTTCCTAGAGTAGATCTTCAAGCAATCGCAAAAAAATTCGGTGGAGGTACTTCTCTAAAGGCTGCTGCTATACCTGCTCCCCGACTGATAAGCTCCCATGAACTAGAAGACTTCAGGCCTCATATAGAGGTTAGGCGGGATCGTGAAACTGGAGAGATTTTTGAAGTTCTTGACGGCTTGATGCTTAAAGATGGCTACTTGTATAAAAAGGTATCCGTAGCTTCATTAATTCACTGGGGTGTTCAGCCTTCAAGCAATGAACTTACAAAGTTTGAGGACTTGGGTAAGAATGATGTTAAAGATGTTAGCTGGCTTTCAAGTATTTATAAAGCACGAACGAAAAAGAAGTTACCTGAAACATCCCATCAGACGGATAATGAAAAATCTAATCAGAAAGGTGGAGATAAATCTAATCAAAAAACTGGAGGAAAATTGAATCATGAAGATGGAGATAAACAGAGAAATGGTTTTGATATAGATGATCTTGTGTTATTTGGGAAGAAAGATTGTGGTATAATAGTAGACATGGAAAATGACACATTTAAGGTCTTAAAAGGTGATTTGAAGGGCCCGGAGGTCGTGACTGTTAATATACGGTCAATTAAGAAAAACTGCATTGATAAAGTTTTCACAGCTACTGATCGCTGCAGGAAAACAATATCTATTGATGACGTTGTAAAGGTTTATGAAGGAACTTATGAGGGTAGAGAAGGAATTGTTAGACACATGTACAAAGGCATTCTTTTTATTTATGATGAATGTCAAACCGAAAACAATGGATTCTTTTGTGCCAAATCAGATATATGTGATCTACTGAAGAAAGCACGGGATTTTGGTGGTGGAAGAATGGTATTATTTTCTAGATCGTTTGTTCTGGTTTTGGTAAACTGTCAATGCTATTTAATTTTCTTTTCCAAAAACCGCTACAGCAATTCTCGAGGAACTTTTTCTATTGGCCAAATGCTGAGAATTCGTCAAGGGCCTCTCAAGGGATATCTATGCCGTGTTATTCGCATGTACCGTGCTGATATCACGGTCAAGCTTGATTCTCTTGGGAAGCTTCTTACAGTGGATGAAAAATTACTATCTTTACCAAATTCGAAGAGGGATGATGCCCCTGCCATGCAATGCGACATGTTTGGATCTCAAGACGAGCAGTCCACAGGTGACCTACTGGATGCAGGAAGAGGATTAGGGATGGATAGCTTTGAGCTAAACGCTGGAATGTCTTCATTTGGAAGGGAGTCCTGGAATGCTGCTTCCATTCCTAGTTCATTTCCCAAGGAAAATGAAAACAAAGATGAAGCTGATCCATGGGGAAGCAAGCTGCCTTCTTGGGGTGCAGATCAAGAACAAGGAGCCGGAAGTGGCTGGGGTAAAGCACCAAACCCTAATGAAGAGCATAGCTCATGGAATAAAGTGGAGAACAGTGAAAAAGGTGCTGATACAGAAGCCTGGAACAAGACATCTTCTAAAGAAGATATGTCAAACAGTGGCTGGAAAAATGATAATTTTGTTCTGAAAACAGACCAAGCCTGGAGCACAAAAGGTGCTGGCGATGGCTGGAACAGTGCAGTTGATGCTGCTGCTGCTGAAGGTATTAGTGATACTAGTGGATGGGGCAAAAAACTTTCAGATCCTGTTGAAAATCAGGCCTTTAGTGAAGATGGCTGGAATAAAGCAGCAGCCAAGCCTCCCACAATAAACAGTACCGAAACTAGTGGATGGGGAAAAAATAAACATCCTAATTCTGATGCTGCTGGAAGTTGGGATACCAAAGGTGCTGCAACTAATTGGAACAAAGATGCCAGTGAAAAGGGCAAAGCAGACGGTTTTGGCGGGCAATCGGGTAACTGGGCTTCGTTCAAGAGTGGTGGGAGTGAGAATCAAGACGCATGGGACATCAAGGGAAAAGGCACAAGTGAAACAGGAGGCTGGAAGAAAACAGTGGATGAAAACCCAGCTTCTGGTTTGGCTGTTTCCGCAGTTGATGATGGAAACCAATCAAACAGCTGGGGAACGGGGATGGGTCTTCCAACTTCTAGTGATTGGGGAAATTCTAAAGCAGTAAATGCTGATACAGACATATGGGGTGCTTCTGCAACAAATTTAGCAACACCATCAGTTCAAAATGAAGGTCAAGCGAACAGTTGGGACAAAGTAAGCACACTTTCAAACTCTGGTGGATGGAAAAATTCTAAACCAGTAGATGCAACATCTAATGAAATTTGGACGAAAGATGGATTCTCTAGCGAAGGTGATGGATGGAATAAAGTGAAGTCATCTGATAGGGACGAGTCTTCTGGCTGGAACAAGGTTGGCAATGGAGAAGGCGGGAAAGATGCATGTGTGGATAGCTGGACTAAACCAAAGGGTTCTGATGGACAAGGCTTTGGACAAGAAAGCCAAAGGGAATGGAAGGCAGGAAAAGATTCCAACTTTGGTAAATCAAAGGATTTGGATTGGGGCCAAGGATTGGGCTGGTCACAAGGGAATTCCAATAGTGAAAATGGTAAGTGTTGGGGTGATCAGCATGTTAATAGTTGGAATCAGCAGAGGGATTCTGATAGTGGCAGAGGATTTGCTAGGGGCAGGGGAAGGGGCAGATTTGGGGGTCGGGGAGGTAGAAATCAGGATAATTTTGAGAATCCAAATAACTCTGATGGGTTTGGCAATAATGCATCGACTAATAGTTGGGGAAAAGCTGAGAGTTCCGAAGGGCAAGGCTTTGGTCAAGAAAATGAAAGCGGATGGAAAACAGGGAATGATGGGAGTAAATATGGCGACGGTTCTAAATTTGGTAAATCAAAGGATTCTGGTTGGGGTCAAGGGTCGGGTTGGTCGCAAGGGAATTCCAATAATGAAAGTGGTAAGAATTGGGGTGATCGGGGTAGTAGTTGGAATCAACAAAGGGATTCCGATGGTGGAAGAGGATTTAGCAGGGGCAGAGGAAGAGGTAGATTTGGGGGTAGGGAAGGTAGAAATGATGGTGGTAATTTTGAGAAATTAAACGATTCTGATGGGTTTGGAAATGATGTATCAAGAGATAGCTGGGGAAAACCAAACAGCTCTGAAGGGCATGGCTTTGGTCAAGAAAATGAAAGCGGATGGAAAACAGGAAATGATTGGAGTAAAGATAATAATGATTCAAACTTTGGAAAATCAAAAGAGTCTGATTGGGGTCAAGGGTCGGGTTGGTCACAAGGGAATTCCAATAATGAAAATGGCAAGAATTGGGGTGATCAAGGTAATAATAGCTTTAATCAACAGAGGAATTCGGATGGCGGAAGAGGATTTGGCAGGGGTAGAGGAAGGGGGAGGTTTGTGGGGAGGGGAGGCAGAAATGATGGTGGTAATTTTGAGAACTCTGATGGAGGTTGGAGATCTGGAAGGGGTGGAGGTCGCGGCTGGAATGGAGCCGGCAATTACAATAGGGACAATTCTGATACAAGAGAGTTTGGTCAAGGCCGAGGCCGCGGCCAAGGCCGAGGACGATTGCAAGGCCAAGGTCATTCTGAGTCATCTGACTGGAGAAATGCACAGGAAAATTCTGATGATGGTAAAGCTCTTTCAAGCTGGGGTGGTGCAGGTGGCAGCAGCTGGGGAAAACCGATGGATGAACAATTAGCCAGTGCAGCAGATGGCAAGGTCGGTTGGAACACTGGGAATTCGTTTGCCAACGGCAGCGCATCCAATTGGGATTCTGATTTGAAGGCAGGTCAAGTTTCTGACTGGAACAAAGATGCAAGCATAGGCAAACAGGTAGATACTTGGGGCAAGGACTCTGAAAATCTAAATTTGAGTGCCCCAAAAGCCTCAGATAATAAACTTTCAAGCTGGAATCAGACGAGCAATAATGCTGCTTCAGTCCATTCTAGTACCTGGGAAAAGAATGAGATAAAAGATACGCACACAACTGGTTGCGGATCTGATTCTCAAGATGCTGGCGGAAGTAAAAATGACTCGAATGCAGATAAGGCTTTGGGCTGGACCAAGGGTTCAGGTACAGGAAAAGAGGTTGATACCTGCGGCAAAGATACTAAAAATGACAATTGGAACACTCCTAAAACCTCTGCTAATAAATTGTCTAGCTGGAATCAGACAGGGGAAATGAATGAGATAAAAGGCACGGATATGCCAAATTCTTCAGAAGTTACACTGGCGGATTGGGCTCATAACACTGCTGAAGGCAAAGATGCTGCTAGTGACCATAAATCCTTTAATGTGAAGTCTAATAATGATTGGAGCCAAACTTCTGCACTGAACAAAGAAAATGAAGCTGGTGGCAGTGAAGGCGGCTGGGCAGACAGGCCGGCCAAACAACCCTCTACTGAGAATGAAAATAACTGGGGCAAGTGCTCGAAAGGTTTGGGTGATAACAACTCCGCAAGCTGGGATTCTTCGCATACCCCCAGCCAACAAGGTAATTGGTGCGGGGCGGCGAAGGATTCTTTTGGAAGCCAGTCATTTGATTGGGGCAATGCCGGGGAAAACAAATGGAGCAATCAGAGCAGAGGAAGTCATGGCAATTCAGGCGGTTGGGGCTGTGGGTCAGATTCAGGTAGTGGCCGTGGGTCAGATTCAGGTAGGGGTTGGGGAAGAGGGAGGGATGGCTCATTTTCTGGCAGGGGTCGTGGCCGCGGTAGGAATTTCGGTGGTGTGCAGCATTCTAGGGGTTGGAACAGTAACGATGGCTCCTTTGAACGCAAAAAGGGTGGTTGGAATAGTAGTGGACGAAATGAAGAGATGGGCTCGTGGGGCGCCGGTTCTGCTGAGCAGTTGGATACGAATGAGGGCAGCAAAAGTAGCTGGACTTCTGTTGCCGATTCTAGCGGAAAAGTGGCATCTGGATGGGAATCGAGCTCTTTGGCAAAAGAGACTGCAGCTGTTGGATTTGGTGATAAAACGACAACTGGTTGGGAATCTGCTTCAGCAAAAGAACCCGCTGCTGAGGCCAAGATATCAGATAAGCAGGAGAATGATCCTTGGGGGAAAGCGGGCGGCTCTTCTTGGGGTGATTCGGGCGGCTGCTGTGGAGGAACTCCAGGAGGGTGGTAG

Network for GWHGAAEX008516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03439.12	Spt5-NGN	155	238	7.40E-20

Protein Sequence

>GWHPAAEX008516
MAVKGKGKQIAGKSPASSSSPSAKRKDSCARGEGSDAQPNKRRSGVSQFVDDTAVDADFVAEEEEEEDELDWEIDEDFDFELPDIGIKEVKNATKESVNSSSLPFFIKEEEMNNDELEEAIKERYRGSEFVSFDEDIKECVNPELVAYTTKDLFIWRVKCMMGRERQAAFCLMQKFVDLLKIGKTLQIFSVFALDHVKGFVYVEADKASNVFEACHGLCILYPSRIDLVPRNEIPNLLSIQKKTCGISKGMWVRMKSGKYKGDLAEVVFVNDTKKRVTIKLVPRVDLQAIAKKFGGGTSLKAAAIPAPRLISSHELEDFRPHIEVRRDRETGEIFEVLDGLMLKDGYLYKKVSVASLIHWGVQPSSNELTKFEDLGKNDVKDVSWLSSIYKARTKKKLPETSHQTDNEKSNQKGGDKSNQKTGGKLNHEDGDKQRNGFDIDDLVLFGKKDCGIIVDMENDTFKVLKGDLKGPEVVTVNIRSIKKNCIDKVFTATDRCRKTISIDDVVKVYEGTYEGREGIVRHMYKGILFIYDECQTENNGFFCAKSDICDLLKKARDFGGGRMVLFSRSFVLVLVNCQCYLIFFSKNRYSNSRGTFSIGQMLRIRQGPLKGYLCRVIRMYRADITVKLDSLGKLLTVDEKLLSLPNSKRDDAPAMQCDMFGSQDEQSTGDLLDAGRGLGMDSFELNAGMSSFGRESWNAASIPSSFPKENENKDEADPWGSKLPSWGADQEQGAGSGWGKAPNPNEEHSSWNKVENSEKGADTEAWNKTSSKEDMSNSGWKNDNFVLKTDQAWSTKGAGDGWNSAVDAAAAEGISDTSGWGKKLSDPVENQAFSEDGWNKAAAKPPTINSTETSGWGKNKHPNSDAAGSWDTKGAATNWNKDASEKGKADGFGGQSGNWASFKSGGSENQDAWDIKGKGTSETGGWKKTVDENPASGLAVSAVDDGNQSNSWGTGMGLPTSSDWGNSKAVNADTDIWGASATNLATPSVQNEGQANSWDKVSTLSNSGGWKNSKPVDATSNEIWTKDGFSSEGDGWNKVKSSDRDESSGWNKVGNGEGGKDACVDSWTKPKGSDGQGFGQESQREWKAGKDSNFGKSKDLDWGQGLGWSQGNSNSENGKCWGDQHVNSWNQQRDSDSGRGFARGRGRGRFGGRGGRNQDNFENPNNSDGFGNNASTNSWGKAESSEGQGFGQENESGWKTGNDGSKYGDGSKFGKSKDSGWGQGSGWSQGNSNNESGKNWGDRGSSWNQQRDSDGGRGFSRGRGRGRFGGREGRNDGGNFEKLNDSDGFGNDVSRDSWGKPNSSEGHGFGQENESGWKTGNDWSKDNNDSNFGKSKESDWGQGSGWSQGNSNNENGKNWGDQGNNSFNQQRNSDGGRGFGRGRGRGRFVGRGGRNDGGNFENSDGGWRSGRGGGRGWNGAGNYNRDNSDTREFGQGRGRGQGRGRLQGQGHSESSDWRNAQENSDDGKALSSWGGAGGSSWGKPMDEQLASAADGKVGWNTGNSFANGSASNWDSDLKAGQVSDWNKDASIGKQVDTWGKDSENLNLSAPKASDNKLSSWNQTSNNAASVHSSTWEKNEIKDTHTTGCGSDSQDAGGSKNDSNADKALGWTKGSGTGKEVDTCGKDTKNDNWNTPKTSANKLSSWNQTGEMNEIKGTDMPNSSEVTLADWAHNTAEGKDAASDHKSFNVKSNNDWSQTSALNKENEAGGSEGGWADRPAKQPSTENENNWGKCSKGLGDNNSASWDSSHTPSQQGNWCGAAKDSFGSQSFDWGNAGENKWSNQSRGSHGNSGGWGCGSDSGSGRGSDSGRGWGRGRDGSFSGRGRGRGRNFGGVQHSRGWNSNDGSFERKKGGWNSSGRNEEMGSWGAGSAEQLDTNEGSKSSWTSVADSSGKVASGWESSSLAKETAAVGFGDKTTTGWESASAKEPAAEAKISDKQENDPWGKAGGSSWGDSGGCCGGTPGGW

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.600
SRP064423	SRR2545915	Juvenile tuber	34.530
SRP108465	SRR5643513	five period of Gastrodia elata	35.140
	SRR5643514	five period of Gastrodia elata	36.870
	SRR5643515	five period of Gastrodia elata	34.000
	SRR5643524	five period of Gastrodia elata	37.200
	SRR5643525	five period of Gastrodia elata	33.680
	SRR5643528	five period of Gastrodia elata	23.690
	SRR5643658	five period of Gastrodia elata	28.460
	SRR5643659	five period of Gastrodia elata	46.160
	SRR5643660	five period of Gastrodia elata	46.170
	SRR5643661	five period of Gastrodia elata	44.230
	SRR5643662	five period of Gastrodia elata	35.300
	SRR5643663	five period of Gastrodia elata	44.230
	SRR5643664	five period of Gastrodia elata	43.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.840
SRP279888	Gastro	Gastrodia elata tuber	46.46
	Juven	Juvenile tuber	74.40
	Mother_Gastro	Mother tuber of Gastrodia elata	28.00
	Mother_Juven	Mother tuber of Juvenile	59.61