Detail information of GWHGAAEX008517/evm.TU.scaffold_220.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG06549.00E-132G2/Mitotic-specific cyclin A
nrgi|743872767|ref|XP_010906637.1|4.82E-153PREDICTED: cyclin-A3-1-like [Elaeis guineensis]
Swissprottr|Q3ECW2|CCA34_ARATH2.00E-130Cyclin-A3-4
trEMBLtr|M0T612|M0T612_MUSAM3.00E-151Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P11130_001}
TAIRAT1G472309.00E-132CYCLIN A3;4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215163374165264-
Transcript Sequence

Network for GWHGAAEX008517

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.22Cyclin_N912198.40E-43
PF02984.18Cyclin_C2223392.20E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06627CCNA AMPK signaling pathway map04152
Cell cyclemap04110
Cellular senescencemap04218
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.180
SRR2545915Juvenile tuber2.470
SRP108465SRR5643513five period of Gastrodia elata8.170
SRR5643514five period of Gastrodia elata7.230
SRR5643515five period of Gastrodia elata4.840
SRR5643524five period of Gastrodia elata6.140
SRR5643525five period of Gastrodia elata0.240
SRR5643528five period of Gastrodia elata0.330
SRR5643658five period of Gastrodia elata0.440
SRR5643659five period of Gastrodia elata1.550
SRR5643660five period of Gastrodia elata1.030
SRR5643661five period of Gastrodia elata0.750
SRR5643662five period of Gastrodia elata0.440
SRR5643663five period of Gastrodia elata1.240
SRR5643664five period of Gastrodia elata0.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.730
SRR6049655Rhizomagastrodiae_C368-T10_good_112.160
SRR6049656Rhizomagastrodiae_C368-T07_good_111.730
SRR6049657Rhizomagastrodiae_C368-T07_good_16.120
SRR6049658Rhizomagastrodiae_C368-T04_good_15.790
SRR6049659Rhizomagastrodiae_C368-T04_good_13.250
SRR6049660Rhizomagastrodiae_C368-T01_good_14.130
SRR6049661Rhizomagastrodiae_C368-T04_good_19.400
SRR6049662Rhizomagastrodiae_C368-T01_good_112.160
SRR6049663Rhizomagastrodiae_C368-T01_good_15.490
SRR6049664Rhizomagastrodiae_C368-T10_good_114.150
SRR6049665Rhizomagastrodiae_C368-T10_good_114.150
SRP279888GastroGastrodia elata tuber 1.18
JuvenJuvenile tuber0.85
Mother_GastroMother tuber of Gastrodia elata 0.75
Mother_JuvenMother tuber of Juvenile 0.40