Detail information of GWHGAAEX008518/evm.TU.scaffold_220.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262196624|ref|YP_003267833.1| | 1.00E-18 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| KOG | KOG0118 | 7.00E-71 | FOG: RRM domain |
| nr | gi|695022520|ref|XP_009398392.1| | 1.58E-102 | PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8RWN5|RZ1C_ARATH | 2.00E-71 | Glycine-rich RNA-binding protein RZ1C {ECO:0000305} |
| trEMBL | tr|M0SR50|M0SR50_MUSAM | 6.00E-103 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P22370_001} |
| TAIR | AT5G04280 | 7.00E-71 | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000215 | 166729 | 184697 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008518
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 9 | 78 | 3.20E-22 |
| PF00098.22 | zf-CCHC | 127 | 143 | 2.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12885 | RBMX, HNRNPG | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.460 |
| SRR2545915 | Juvenile tuber | 16.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.670 |
| SRR5643514 | five period of Gastrodia elata | 37.640 | |
| SRR5643515 | five period of Gastrodia elata | 42.460 | |
| SRR5643524 | five period of Gastrodia elata | 33.100 | |
| SRR5643525 | five period of Gastrodia elata | 51.180 | |
| SRR5643528 | five period of Gastrodia elata | 39.100 | |
| SRR5643658 | five period of Gastrodia elata | 39.880 | |
| SRR5643659 | five period of Gastrodia elata | 58.310 | |
| SRR5643660 | five period of Gastrodia elata | 67.240 | |
| SRR5643661 | five period of Gastrodia elata | 66.260 | |
| SRR5643662 | five period of Gastrodia elata | 66.090 | |
| SRR5643663 | five period of Gastrodia elata | 58.200 | |
| SRR5643664 | five period of Gastrodia elata | 63.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 53.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.57 |
| Juven | Juvenile tuber | 28.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.25 | |
| Mother_Juven | Mother tuber of Juvenile | 27.00 |