Detail information of GWHGAAEX008522/evm.TU.scaffold_220.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743792024|ref|XP_010923583.1|0PREDICTED: heparanase-like protein 2 isoform X2 [Elaeis guineensis]
Swissprottr|Q9FF10|HPSE1_ARATH0Heparanase-like protein 1 (Precursor)
trEMBLtr|A0A096U0J7|A0A096U0J7_MAIZE0Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G480451_P02}
TAIRAT5G078300glucuronidase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215236191240780+
Transcript Sequence

Network for GWHGAAEX008522

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03662.13Glyco_hydro_79n263451.80E-145
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07964HPSE Metabolic pathways map01100
Glycosaminoglycan degradationmap00531

Gene Ontology

GO term OntologyName
GO:0016798Molecular Functionhydrolase activity, acting on glycosyl bonds
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.830
SRR2545915Juvenile tuber2.050
SRP108465SRR5643513five period of Gastrodia elata13.980
SRR5643514five period of Gastrodia elata27.800
SRR5643515five period of Gastrodia elata23.240
SRR5643524five period of Gastrodia elata24.920
SRR5643525five period of Gastrodia elata2.530
SRR5643528five period of Gastrodia elata5.450
SRR5643658five period of Gastrodia elata4.030
SRR5643659five period of Gastrodia elata2.030
SRR5643660five period of Gastrodia elata2.520
SRR5643661five period of Gastrodia elata2.110
SRR5643662five period of Gastrodia elata1.680
SRR5643663five period of Gastrodia elata1.930
SRR5643664five period of Gastrodia elata2.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.950
SRR6049655Rhizomagastrodiae_C368-T10_good_136.890
SRR6049656Rhizomagastrodiae_C368-T07_good_118.240
SRR6049657Rhizomagastrodiae_C368-T07_good_111.150
SRR6049658Rhizomagastrodiae_C368-T04_good_118.480
SRR6049659Rhizomagastrodiae_C368-T04_good_117.350
SRR6049660Rhizomagastrodiae_C368-T01_good_111.760
SRR6049661Rhizomagastrodiae_C368-T04_good_115.080
SRR6049662Rhizomagastrodiae_C368-T01_good_124.560
SRR6049663Rhizomagastrodiae_C368-T01_good_123.230
SRR6049664Rhizomagastrodiae_C368-T10_good_144.830
SRR6049665Rhizomagastrodiae_C368-T10_good_144.830
SRP279888GastroGastrodia elata tuber 2.21
JuvenJuvenile tuber3.00
Mother_GastroMother tuber of Gastrodia elata 12.84
Mother_JuvenMother tuber of Juvenile 12.74