Gene detail

Detail information of GWHGAAEX008524/evm.TU.scaffold_220.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780433\|ref\|YP_008432240.1\|	3.00E-29	hypothetical protein N186_04380 [Thermofilum sp. 1910b]
KOG	KOG1906	1.00E-144	DNA polymerase sigma
nr	gi\|672110192\|ref\|XP_008794020.1\|	1.28E-161	PREDICTED: uncharacterized protein LOC103710172 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|A0A068UKA9\|A0A068UKA9_COFCA	7.00E-161	Coffea canephora
TAIR	AT3G61690	1.00E-144	nucleotidyltransferases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000215	263335	306367	-

Transcript Sequence
>GWHTAAEX008524 ATGGAATTTCGCTCTGAGAATCCAGTCTCCATGGACGCCTCATCTCCCGCCCATACCCTAACTCAGCACAGGAACCTTCGTTGCATCGTTAAGCTCGGCGGGGCAGCCATCACCTGCAAGAACGAGCTGGAGAAAATCAACGAGGATAGCCTAGGAGTAGTATGCGCCCAACTGAGGGAAACGATGATACCGGGTACGGTAGATTCTGAAGCGAAGGTTTTGGGCATGGACTGGAGCAGGCGGCTTGGGGTTTCCTTGGATTTAATGGCCGACAAGTTCGATGAAAATTCCTCAATGGTTTCTGATGGCAACTTCATCCTAGTCCATGGAGCAGGTTCTTTTGGCCACTTTCAGGCTAGTAGATCTGGAGTCAACAAAGGAGGTTTGCATCTGCCACTTGTTAAGGCTGGTTTTGTAGCTACACGAATCTCAGTAACATCGTTAAACCTTGAAATTGTTAGAGCTCTTGCTAGAGAAGGAATAACTGCTGTGGGGATATCACCATTTGCTTGCGGGTGGTCAACTCATGGTAGAAATATTTCTTCTTGTGATATTTCTCAGATCACTAGAGTTCTCTGTGCTGGATTTGTTCCTGTTTTGCATGGAGATGCTGTGATAGATCATTCGCAGGGATGTACAATACTGAGTGGAGATGCCATTATACGCCATCTAGCACAATTCCTATTACCAGAATATGTAGTATTTCTTACAGATGTTCTTGGTGTATATGATCGCCCACCAACATATCCAAATGCCCGACTTCTCCGTGAGATCGCCGTAGATGAAGAAGGAAACTGGTCGATTGTAAACCCTGTATTACAGGATGTGGAAAAACAAGTCGAGATAACAGTTGCTTCTCATGACACAACCGGAGGAATGAAGACGAAGATAATGGAAGCAGCAGCGATAGCCAAACTCGGCATTAATGTATACATAACTAAGGCTGGCACAGAAGATTCTCTGAGAGCCCTCAAAGGCGACACAACTGATAACTGGCTTGGAACTGTAATTCGCTCCACCAAAAATCATGCGGATAAAAAGACGAGCCCTGTTTCCCCAAATGGACTTCTGCCGGGCAGAGAAACTTATGTGGGAAGAGCTCTTGATTCTGAGAAATGGTTGGCGGCAGAGGAGAGGGTGGGAGAGCTCATCACTCGCATTCAGCCCAATGAAGAATCTGGGAAACAGAGGCAGGTTATAGCTGATTATATTCAGAGTCTCATTGGAAAATGCTTTCCGTGCCAGGTTTTCATTGTTGGATCTGTGCCCCTGATGACTTACTTACCTGATGGAGATGTTGACTTGACTGTATTTAGTAGTACTGAAAATTTGAAAGATACATGGGCTAACAAAGTCTACCAAGTAATGAAGGAGGATGAGAAGAATGAGAAAGCTGAATTGCATGTAAAAGATGTTCAACTAATAGAGGCAGAAGTAAAGGTTATAAAATGTCTTGTAGAGAGCATTGTTGTGGACATTTCATTTAATCAGACTAGTGGTTTGGGTGCTCTTTATTTCCTCGAAGAGATGGACCAAATGATAAGTCAAGATCATTTATTTAAGCGGAGTATCATTCTTGTTAAGGCTTGGTGTTACTATGAAAGTCGTATTTTGGGTGCTCATCGTGGTCTTATTTCAACATATGCACTGGAAACTTTGGTTCTTTATGTTTTTCTAGTTTTCGACAATTCATTTGCTGGACCACTCGAGGTTCTATACCGTTTTCTTGAATATTTTAGCAATTTTGATTGGGATAATTTTTGTATCAGCATGTGGGGTCCTGTTACTTTGCATTCACTTCCAGAGATAGCTGTGATGCCTCCAAGAATGGAAAGTGCTGAATTGTATCACAAGAACATCCTTCTCAAAAGTTGTAGCATATTCTATGATGGTTTGACTGCTGGCCAACACAGCCAGCGACGATCTTTTGTTTCCAAATTTTTCAATGTTGTTGACCCTTTATGTATACATAACAACCTTGGACGCAGTGTTTCCAAAGGAAACTATTATAGGATTTGCAGTGCATTTGTGTTTGGGGCCAAAAAGCTTGCCAGCCTGCTTGATTTTCCAAAGGAAGAGATGATCTCTGAGCTCGGTCAGTTCTTCAGGAACACATGGGAAAGACTTGGAGCTGGTTTTCACACCAATTCTCTTACACTAAGTATGGTGGAGAATTGTAATATCTCAGAAGATCCTGGTGGTGAGCCTCTGGCTGTTGTTGAACCATCTTTTTATGGTGCCTCTTATCGGATTCATAAAATAATCAATCAACATTCCAAGGACATTTGTAGGCATAATGGAATTCGAACGGCTGTTTGTAATGCTAAAAATAAAGACGACAGTTACATTAGCAGAAAAAATCAATTTCATGCCAAAAAAAAGTTTGGCTATGCAGAATCTTTGAGATCTAACAAAAATCTGAGTTCCATCTATAGCACTAACAATGATGAAGGAGATTGCAGGGCGTTGGATAAGCTTGCCCGATTTTCTTCTGCAAAAACTTGTTTTCAATCTCGTCAGATTAACAGGTCTGAAATTGAAAGGAAAGCTATAGTTAAAAAATCTGAAACTCATGAAGCTCGAGAACTTGATTGCAGAAGCAAGAGTCTGGCTTCCAGCATTACGAGCAGTCAAGAAGCATCAACTGTTGATGGCTCATCATGCTCAAGGCAAAGTTCTTTTCGAGCTGTAGTTTCAAATGGTACATCGCATGGCTGTCATGATAGTGCTATCTTTTCTGCAGCTGTGCCTTCACCGAGCAGGGAATGGGCAAGAGAACCGCATTCTCAGCAATCTTATATTACAAATAGCTCACAGAGAAGCTACAGAGCTCCGCCAAAGGATAATAATTATGATGTACTAGTTAATGGATCGGCCCAAGTGAGTGATGATGGCTCACACAATGCTTCAGGGCAGATGATTCCTGACAACAACTCACAGCAAAGGGCAATTGCAAATTCTGGGGCGGTTCTGTCTGCACTGTATCCTACGGGCCCACCAGTCCCATTCTTAGATGTGATTCAGAATTTTAACTTCCCCACTCACAGAAGCCGCTATGATGGATTGCAGGGTGTGCTTGATAATGAAACTTTAAATTTTGACAGCACGCCTTTTATCGGAAATGTCAATTCAGGTGGAATGCCTGGTCAGCAGGATACTCATGTTGCTGGAAGCACATCAGGAAATGAATTGCCGCTTATAACTTCAAAACCAAATATACATGGATGGCCTCACCAGAGCGTTCCAATTTTAGGACCCCCAGTTTATCCTTACCCTACAGTAGTTCCCGCAGCGCACTTTCAGAGATTTTACACACCAAATGGTCCAATTAGATCATTTCTTTCACAGAATTCCCAATTTGTGCCTTCCAATTATGTTTGGCCGGAAGCTCAGATAAGATCTGCCGACAGTTCTTACTATTGGAGATGGAATCACTAAGCATGATGGTGGCATTAGAACCTATTACTTTTAATTGTCGGTCATCTCTCAAGTTGATGATACCGAAGAACCATCATTATGGCTTTCCAATCAGACTGACAGGGAAAATGTGAACATTCATTCATACATTGAGGCATGACTCTGCCCTCTTTCTTGACGCCTTTTTTCTTAATACTTTTCTTAAACAAATCCGTTATTCTTTTTTATATATCAGGATATAGGCATGAAAAATGATAGCTAATATTTTTTGGAAAAATAAATTAATAATGTTTCCTTCTT

Network for GWHGAAEX008524

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.27	AA_kinase	27	314	4.80E-63

Protein Sequence

>GWHPAAEX008524
MEFRSENPVSMDASSPAHTLTQHRNLRCIVKLGGAAITCKNELEKINEDSLGVVCAQLRETMIPGTVDSEAKVLGMDWSRRLGVSLDLMADKFDENSSMVSDGNFILVHGAGSFGHFQASRSGVNKGGLHLPLVKAGFVATRISVTSLNLEIVRALAREGITAVGISPFACGWSTHGRNISSCDISQITRVLCAGFVPVLHGDAVIDHSQGCTILSGDAIIRHLAQFLLPEYVVFLTDVLGVYDRPPTYPNARLLREIAVDEEGNWSIVNPVLQDVEKQVEITVASHDTTGGMKTKIMEAAAIAKLGINVYITKAGTEDSLRALKGDTTDNWLGTVIRSTKNHADKKTSPVSPNGLLPGRETYVGRALDSEKWLAAEERVGELITRIQPNEESGKQRQVIADYIQSLIGKCFPCQVFIVGSVPLMTYLPDGDVDLTVFSSTENLKDTWANKVYQVMKEDEKNEKAELHVKDVQLIEAEVKVIKCLVESIVVDISFNQTSGLGALYFLEEMDQMISQDHLFKRSIILVKAWCYYESRILGAHRGLISTYALETLVLYVFLVFDNSFAGPLEVLYRFLEYFSNFDWDNFCISMWGPVTLHSLPEIAVMPPRMESAELYHKNILLKSCSIFYDGLTAGQHSQRRSFVSKFFNVVDPLCIHNNLGRSVSKGNYYRICSAFVFGAKKLASLLDFPKEEMISELGQFFRNTWERLGAGFHTNSLTLSMVENCNISEDPGGEPLAVVEPSFYGASYRIHKIINQHSKDICRHNGIRTAVCNAKNKDDSYISRKNQFHAKKKFGYAESLRSNKNLSSIYSTNNDEGDCRALDKLARFSSAKTCFQSRQINRSEIERKAIVKKSETHEARELDCRSKSLASSITSSQEASTVDGSSCSRQSSFRAVVSNGTSHGCHDSAIFSAAVPSPSREWAREPHSQQSYITNSSQRSYRAPPKDNNYDVLVNGSAQVSDDGSHNASGQMIPDNNSQQRAIANSGAVLSALYPTGPPVPFLDVIQNFNFPTHRSRYDGLQGVLDNETLNFDSTPFIGNVNSGGMPGQQDTHVAGSTSGNELPLITSKPNIHGWPHQSVPILGPPVYPYPTVVPAAHFQRFYTPNGPIRSFLSQNSQFVPSNYVWPEAQIRSADSSYYWRWNH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016301	Molecular Function	kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.090
SRP064423	SRR2545915	Juvenile tuber	8.530
SRP108465	SRR5643513	five period of Gastrodia elata	7.550
	SRR5643514	five period of Gastrodia elata	10.980
	SRR5643515	five period of Gastrodia elata	8.410
	SRR5643524	five period of Gastrodia elata	8.990
	SRR5643525	five period of Gastrodia elata	4.970
	SRR5643528	five period of Gastrodia elata	4.620
	SRR5643658	five period of Gastrodia elata	5.530
	SRR5643659	five period of Gastrodia elata	10.700
	SRR5643660	five period of Gastrodia elata	10.970
	SRR5643661	five period of Gastrodia elata	10.140
	SRR5643662	five period of Gastrodia elata	7.770
	SRR5643663	five period of Gastrodia elata	11.140
	SRR5643664	five period of Gastrodia elata	9.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.430
SRP279888	Gastro	Gastrodia elata tuber	12.70
	Juven	Juvenile tuber	10.93
	Mother_Gastro	Mother tuber of Gastrodia elata	7.27
	Mother_Juven	Mother tuber of Juvenile	9.63