Gene detail

Detail information of GWHGAAEX008527/evm.TU.scaffold_220.16

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1134	Uncharacterized conserved protein
nr	gi\|695039720\|ref\|XP_009407408.1\|	PREDICTED: CSC1-like protein HYP1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8GUH7\|CSCLC_ARATH	CSC1-like protein HYP1
trEMBL	tr\|M0TCS4\|M0TCS4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P34810_001}
TAIR	AT1G69450	Early-responsive to dehydration stress protein (ERD4)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000215	350792	412282	-

Transcript Sequence
>GWHTAAEX008527 GCTGGCTTCGCCAGCCGGAAAGCTCTTTTATTTTGTTCCGATACCCAAATTTTCTTTGTGGATTACTACACGAGCTTCATCCGCTCCCTTTCCGGCTTCCCCTTCTCCCGATTATAGGGAAAAATTAAGGGTCAGGGCTCGAATTCTCTTATAAGCGATCAAAATGATCGTTTCGGCTCTGCTCACCTCCGTTGGCATCAATTTCGGGCTTTGCGTGCTATTATTTGCTCTTTACTCCGTCCTCAGAAAGCAATCAGGGAACATCGAGGTTTATGCCCCGCGGTTAGTTGCGGAAGGGAAAGCGCAGAGAAGGGGTGAGTTCAACTTGGAGAGTCTTCTTCCAACCCCAGGTTGGGTGAAGAAGGCATTGCAGACATCGGAAGAAGAGCTTCTTGCTTCCTGCGGCATGGATGCTTTTGTTTTCATGAGGATCTTCATCTTTAGTTTGAAAGTTTTTTCTGTTGCTGCTGTTTTGGGGATGTTTGTTCTTCTTCCTGTAAATTATTTGGGGGATCAACTTCGTGAGACTGATTTTTCTGACATTCCAAACAAGTCACTAGACTTGTTCAGCATCTCAAATGTGAAGAATGGCTCAAATAGGTTATGGGTTCACTTTTCTGCGGCATATGTTATCACGGGGGTTGTGTGTTGTCTGTTGCATTCTGAGTACAAGTATATTTCTTTTAAAAGACTTGAACAATTTAATGCATCCAAGCCCCAATTCTGTGAATTTACAGTCGTTGTCAGTGGAATTCCTTCACATAGCGGGCTTTCACTCAGTGATACTATTGACAGTTTCTTCATGGAGTACCACCCTTCAACCTACTTATCTCATGTAGTTGTTCACCAGACAAATAAGCTTCGAGGTCTCATTAGAGATGCTGAGAATATTTGTAAAAGGCTCACTCGCCTAAAGTCGAGGCCGTATTATCCACCCAGCTCTGGACATGCTGGCTTTTTGGGATTTTTCAGGAAAAGCAAGGATTTAGTGGAACATTATACTAAGAGATTGGAAGATCTAGAAGAGAATGTGAGATTACAACAGTCAAGTTTTTCCATAACAAGAGAGGAACTATCTGCTGCATTTGTTTGCTTTAAATCACGATACGGTGCTTCAGTTGCTCTTCACATTCAACAATCAGCTAATCCGATCGAGTGGGTAATGGAGGAGGCTCCAGAACCTCGTGATGTGTATTGGCCTCTTTTTTCTTCATCATTCATACAGAGATGGATTTCTAAGCTGTTGGTCATAGTGGCGTCAATTGTCCTTACGGTTGTGTTTCTGCTTCCAGTTGCATTTGTCCAAGGACTCACCAATATGGATCAGCTTGAAACGCTGTTTCCTTTTCTGAAAAACATACTTGAGATATCTATTGTCAGTCAAGTAATAACAGGGTATCTTCCTAGTCTCATTCTCCAGTTATTTTTATCAGTTATGCCTCCGACCATGAAGATTTTTTCCACAATGCAAGGGCATATCTCCTTGAGTGGGATTGAGAAGAGTGCATGCAGTAAAATGCTTTCGTTTATTATATGGAATGCATTTTTTGCAAATGTTCTAACTGGATCAGTTACCAGCCAACTACAATTATTGCTTGAACCGAAGGATATACCTTGGAAACTTGCTGTTGCTGTGCCAGCACAAGCCTCTTTTTACATAGCATATGTTGTAACATCATGGACTAGCTTATCAACAGAACTCACACGTGTGCTTGCTCTTATTGGTGATTGGGTTTGTGGTTGCTTCGGATGCTTAGATGATGAACTTCAAGCACCCTCCGTTCGCTATCACAGTGAAATTCCCAGGATTCTGTTATTTCTACTTCTCGGGCTCACCTATTTCTTGTTATCCCCATTGATTCTTCCATTTATTTTGATTTTCTTTTGCTTTGGGTATATCATCTTTCGAAATCAGCTATTAAATGTGTATTTGCCAAAGTATGAGACTGGTGGACAATTTTGGCCTATAGCCCACAATTCTACTATATTTTCTCTAATACTTATGCAAGCTATTGCATTTGGGATATTCGGGCTTAAAAAACTACCACTTGCATCAACCTTACTTTTGCCTCTCCCTGCGGCTACACTTCTATTTCATGGTTATTGTCGAAAACGGTTTCAACCAATCTTCCTGACTTATTCAACCGAGACTCTAATAAAGAAGGATCGCAGTGATCAGAATGATCCAGAAATGAATGGTTTCTTAGATAGATTAAAAACAGCATATAATGACCCTTCTCTTGTGCCCAAGTCTCGGGCACATTATGTGGACGATCGAAGCTCTCCGCTGCTGTCTACTATTGAAGCCTAGCGACTCATATTTCCTTATTATGGAAACCTAGTGGGAGTTTCATCTAACTCGTAATCAGAGGACATTGGGTTAGTTTTCCAACATAGTGCTTCTGTTGCATCGTTCTGGTATTTGTATCTACAGGTGAATCAATGGTGCTTTTGTACCCTTTTTTTCTTTGTTTAGTGTTTTTCTTAATAAAATTATTTATTCATGTAAATTAGATATATGTATATTATATATATAGTTAATGCTCTTTTTCTTCTTAAAAGATTGGTTGATTATGATAAT

Network for GWHGAAEX008527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13967.5	RSN1_TM	6	168	5.50E-43
PF14703.5	PHM7_cyt	190	346	2.30E-30
PF02714.14	RSN1_7TM	359	622	3.60E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.290
SRP064423	SRR2545915	Juvenile tuber	26.420
SRP108465	SRR5643513	five period of Gastrodia elata	10.180
	SRR5643514	five period of Gastrodia elata	11.640
	SRR5643515	five period of Gastrodia elata	10.050
	SRR5643524	five period of Gastrodia elata	10.860
	SRR5643525	five period of Gastrodia elata	18.390
	SRR5643528	five period of Gastrodia elata	14.720
	SRR5643658	five period of Gastrodia elata	18.920
	SRR5643659	five period of Gastrodia elata	10.140
	SRR5643660	five period of Gastrodia elata	11.450
	SRR5643661	five period of Gastrodia elata	11.270
	SRR5643662	five period of Gastrodia elata	10.200
	SRR5643663	five period of Gastrodia elata	10.160
	SRR5643664	five period of Gastrodia elata	10.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.620
SRP279888	Gastro	Gastrodia elata tuber	14.63
	Juven	Juvenile tuber	17.36
	Mother_Gastro	Mother tuber of Gastrodia elata	16.56
	Mother_Juven	Mother tuber of Juvenile	15.26