Gene detail

Detail information of GWHGAAEX008534/evm.TU.scaffold_220.23

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|731389509\|ref\|XP_010650004.1\|	9.78E-53	PREDICTED: uncharacterized protein LOC100244302 isoform X3 [Vitis vinifera]
trEMBL	tr\|K4CVW5\|K4CVW5_SOLLC	5.00E-46	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g083390.1.1}
TAIR	AT5G43630	7.00E-24	zinc knuckle (CCHC-type) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000215	552132	586271	+

Transcript Sequence
>GWHTAAEX008534 AATGGCTATAAAATCGAGGGTTAGGCATTATTAACTCCTCTTGACCCCATGAGTTCATTTCTGCACTTACCACACCTCCTATACCACCCCTCAAGCAGAGATTCAATAATGAAATCTAGCATCTAGTAGCGCTATTCTAGCAGACCTTCAACTCCTCTTTAAGGACCTGAAAATGAATTTTCAAGAACTGATCTCTGTGGAAAAAACGCAAATGCCTAATTCACATGGCAATGGTCAACCACATCATCAAACTTTCCTTGAATGCTCTAAAGAATTTAGCGAAAAGCATAAATGTAATGTATCATGCATGGCCATGGCTTCAAATAATCAAGATCTAAAATCAATCAAGGTGGCATTTCCTGCAAACATAAGCGCAGCATCAAACTCAAGGCCCCCCTTGAAAGATGCTTTGTCTATAGATCTTGCAATAAGAAATAAAAATGGAAATGAAAAGCCACTTCATAGGAATGCTTCCAAGGTGGAAAAAGGCAAACAACCAATCATTTATGATCCAGATGCTAGCAGAAGCTCTTCAAATAGGAGAAAGGAAAACCAAGAGTATTTTGACTGTTTTAACAGCAGGGACAATGTTTCAAAAGTGAAAAGAGCAAGGATTTATGAATTGGAGTCTGAAAAGTTCATTGGAAGCAAGAGGTTGAAGAGGTTGAGCAATGGGAACTGTTCTTTCATTAATTGGATTACTGCTTTAACTAGTGGGTTAAATATATCTTTCAATGCACCTATGGAAGCTTTTCAGAATGGCTCTCAACATATGAAAAGTGTTGTATCTCTTCCTTTCATTTCAGATGATTCAAGAGAATATATTAGTGTTTCTCATGGAATTAAGGGTTTTAGTTCAATCTTTCAAGGCATGTACTTTCCTGGCTTTAATGCAAGTAGCAATAAAGTTATATATTCTTCCTTGAAAGGAACTGAAGGAGATAAAGCAAGCAGATTTTCTTTTTGTGAAAGGTTGAATGGTCAACAAAGTTGTTTTCCTGCTTCAAATTTTAGTTCTGGTGAAAACGACTCCACTGATCCAGTAAGCTTTGATTCTTATGACATCGCTCCTAAGATGAATGGCATTGAATGCAAAGATAAAATTCAAGATAGCTGTGTTGAGTTGATGACACAAAGCAGACATGTTTCTCTGAATAGCTCGTGGATAAAAAGATTTTCTCATGGGGTTTCTTCACCTCAGCAAAAGATCATGCAATACTCAAATTTCTTAGATCTATCAGCTCAGAAATTTCATAGTGGATTGGTACATAAGGTTCCTTACTTGGAAGATCAAAAAATTAGATTGAATGGCTCTCATGGTTCAAACAATTTCAAAAGATCAAAACCAAAGGCTTCTTTTGCACCAAGATTGGATGCCTTGAAACTCACTAAGTTCTTAAAAATTAAAGATGATGACACAAGAGATAAGAAAATTTGTTTGTTTTGTGGCATGCGCGATCATACTATAAGGGAGTGCTCAGTGGTAATTGATACCGGGAAGGAAAAGTATCTGAAATCTAATGCATTGTGTGATAACATTAAAACTACATCTTGCTTCTGCATTCTTTGTTACCAGATAGGTCACTGGGCTGTTGCTTGTTCAAATGCCTCCTACGAGGGAAACCATGTTTCTTTTAAGGCCACATGCTTGGTTGATACTAACTTCAGGATTAAAACAGCGAAAAAACATGGAAATCATCCTTTCTTTAAGAAGGATTATCATCAAGTTCACCATGGAAGAAGTGCTTTTCAAAAAGAGAAAAGAACAAGTTTTGTGGATTGTTCAAAGGTTAGAAGCTGCAAGAATGAATCTGCAGTTTGTGGTTCAGTCAACTTTTGTATGGACAGACTGAATGATACTGTGAACACTGATAAAATGAAATTGGTAACTTTCTGTTCTTCAGGCGGTGAATTGAAGAAATCAGAATTTATGCCAATTTGCATGCATTCATTTGCAGCCACAGATCCAAAAGGTATTTTTGCTGCTGTACAAAAGCTTCGCTTGTCGCGGAAGGATGTTTTAAGATGGATAAAATCAAGGGCCCCTCCTTATAATCTTGGTGGTTTTTTCTTGCGCCTGAGGATTGGGCAAGACAAAAACCTTAGAGGCACTAGCTACCATGTGGCTTATATAAATGGTGCAATTTTCCAAAACTCTATTTATGTATGTGTTGGAAGCTCATCTTACTCGGTTACCAGTCGCTTCATTTCTAATCATGATTTTGAAGAGGATGAGCTGAAGGCCTGGTGGTTTCAATCATTAAAAGATGGTTCCAAAATGCCGTCAAGTGAAGAGTTAAGTCATAAACTCCAGCTTAAGCTAAAATTTGGATTCTAAAAGAATGTGATTTTTGTTCAGTTTTGTGTTCATATGTAATTGTTATCTAGTTTTATTATCTTTTTTTTGAAATATTTATCAATTTATCTGCTCGGAGCTATTTTAGCTATTAGATCCTAGTCATAAGTTCGGAAAGAGTTATGGCTTTGCTGTCATGTATGAATTTACTCGAGCTTATTGTTACAAATGCTTCTATTTTTCAAGTACTTTATGTTGCATTTATCTTTACTAGTCATATCATGTGCAATTCGCACTTATAGTGATATCATAACTAGCTCAATAAAACTAAATAAAGTTTATTGTAATATAATGATTTCCTATGAACTTTTTTCTAACTATTGCATCTTAATTGCCTATCTAAACATCATTTCATGCTTATAAATGTACTATTGATTGCATTCACAGTAAAGTTGTGGTAGCTCTAGTTGAATTTAAGTTTAGAAAAAAG

Network for GWHGAAEX008534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03126.17	Plus-3	606	693	7.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.390
SRP064423	SRR2545915	Juvenile tuber	23.830
SRP108465	SRR5643513	five period of Gastrodia elata	11.250
	SRR5643514	five period of Gastrodia elata	11.580
	SRR5643515	five period of Gastrodia elata	12.070
	SRR5643524	five period of Gastrodia elata	12.200
	SRR5643525	five period of Gastrodia elata	5.380
	SRR5643528	five period of Gastrodia elata	5.230
	SRR5643658	five period of Gastrodia elata	6.030
	SRR5643659	five period of Gastrodia elata	12.420
	SRR5643660	five period of Gastrodia elata	10.090
	SRR5643661	five period of Gastrodia elata	10.620
	SRR5643662	five period of Gastrodia elata	10.040
	SRR5643663	five period of Gastrodia elata	10.560
	SRR5643664	five period of Gastrodia elata	7.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.680
SRP279888	Gastro	Gastrodia elata tuber	8.65
	Juven	Juvenile tuber	8.89
	Mother_Gastro	Mother tuber of Gastrodia elata	5.08
	Mother_Juven	Mother tuber of Juvenile	4.80