Detail information of GWHGAAEX008535/evm.TU.scaffold_220.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|289595866|ref|YP_003482562.1|4.00E-38Replication factor C [Aciduliprofundum boonei T469]
KOGKOG20350Replication factor C, subunit RFC3
nrgi|720034428|ref|XP_010266717.1|0PREDICTED: replication factor C subunit 3 [Nelumbo nucifera]
Swissprottr|Q8VXX4|RFC3_ARATH0Replication factor C subunit 3
trEMBLtr|W9R4F7|W9R4F7_9ROSA0Replication factor C subunit 3 {ECO:0000313|EMBL:EXB68032.1}
TAIRAT5G277400ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215605462642928+
Transcript Sequence

Network for GWHGAAEX008535

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13177.5DNA_pol3_delta2181876.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10756RFC3_5 DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430

Gene Ontology

GO term OntologyName
GO:0006260Biological ProcessDNA replication
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms108.970
SRR2545915Juvenile tuber136.600
SRP108465SRR5643513five period of Gastrodia elata28.040
SRR5643514five period of Gastrodia elata27.670
SRR5643515five period of Gastrodia elata23.870
SRR5643524five period of Gastrodia elata24.100
SRR5643525five period of Gastrodia elata23.260
SRR5643528five period of Gastrodia elata16.960
SRR5643658five period of Gastrodia elata16.250
SRR5643659five period of Gastrodia elata43.810
SRR5643660five period of Gastrodia elata65.260
SRR5643661five period of Gastrodia elata51.370
SRR5643662five period of Gastrodia elata50.390
SRR5643663five period of Gastrodia elata47.390
SRR5643664five period of Gastrodia elata43.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.350
SRR6049655Rhizomagastrodiae_C368-T10_good_142.970
SRR6049656Rhizomagastrodiae_C368-T07_good_137.730
SRR6049657Rhizomagastrodiae_C368-T07_good_148.420
SRR6049658Rhizomagastrodiae_C368-T04_good_151.300
SRR6049659Rhizomagastrodiae_C368-T04_good_150.560
SRR6049660Rhizomagastrodiae_C368-T01_good_149.430
SRR6049661Rhizomagastrodiae_C368-T04_good_147.180
SRR6049662Rhizomagastrodiae_C368-T01_good_135.710
SRR6049663Rhizomagastrodiae_C368-T01_good_137.660
SRR6049664Rhizomagastrodiae_C368-T10_good_129.120
SRR6049665Rhizomagastrodiae_C368-T10_good_129.120
SRP279888GastroGastrodia elata tuber 80.40
JuvenJuvenile tuber33.14
Mother_GastroMother tuber of Gastrodia elata 19.29
Mother_JuvenMother tuber of Juvenile 23.44