Detail information of GWHGAAEX008538/evm.TU.scaffold_220.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|18978346|ref|NP_579703.1|6.00E-95thermosome, single subunit [Pyrococcus furiosus DSM 3638]
KOGKOG03620Chaperonin complex component, TCP-1 theta subunit (CCT8)
nrgi|672167940|ref|XP_008803950.1|0PREDICTED: T-complex protein 1 subunit theta [Phoenix dactylifera]
Swissprottr|Q94K05|TCPQ_ARATH0T-complex protein 1 subunit theta {ECO:0000303|PubMed:11599560}
trEMBLtr|D7TI60|D7TI60_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI29936.3}
TAIRAT3G039600TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215697769717521-
Transcript Sequence

Network for GWHGAAEX008538

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.23Cpn60_TCP1395295.10E-151
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006457Biological Processprotein folding
GO:0051082Molecular Functionunfolded protein binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms227.010
SRR2545915Juvenile tuber305.140
SRP108465SRR5643513five period of Gastrodia elata177.010
SRR5643514five period of Gastrodia elata177.800
SRR5643515five period of Gastrodia elata155.870
SRR5643524five period of Gastrodia elata171.460
SRR5643525five period of Gastrodia elata85.460
SRR5643528five period of Gastrodia elata73.880
SRR5643658five period of Gastrodia elata108.090
SRR5643659five period of Gastrodia elata222.870
SRR5643660five period of Gastrodia elata234.000
SRR5643661five period of Gastrodia elata211.950
SRR5643662five period of Gastrodia elata221.470
SRR5643663five period of Gastrodia elata236.350
SRR5643664five period of Gastrodia elata240.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1201.530
SRR6049655Rhizomagastrodiae_C368-T10_good_1179.380
SRR6049656Rhizomagastrodiae_C368-T07_good_1184.280
SRR6049657Rhizomagastrodiae_C368-T07_good_1225.760
SRR6049658Rhizomagastrodiae_C368-T04_good_1180.780
SRR6049659Rhizomagastrodiae_C368-T04_good_1202.520
SRR6049660Rhizomagastrodiae_C368-T01_good_1209.370
SRR6049661Rhizomagastrodiae_C368-T04_good_1191.390
SRR6049662Rhizomagastrodiae_C368-T01_good_1192.040
SRR6049663Rhizomagastrodiae_C368-T01_good_1193.000
SRR6049664Rhizomagastrodiae_C368-T10_good_1205.000
SRR6049665Rhizomagastrodiae_C368-T10_good_1205.000
SRP279888GastroGastrodia elata tuber 213.02
JuvenJuvenile tuber333.58
Mother_GastroMother tuber of Gastrodia elata 64.90
Mother_JuvenMother tuber of Juvenile 155.43