Detail information of GWHGAAEX008540/evm.TU.scaffold_220.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2429 | 0 | Glycosyl hydrolase, family 47 |
| nr | gi|743760286|ref|XP_010936128.1| | 0 | PREDICTED: probable alpha-mannosidase I MNS4 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FG93|MNS4_ARATH | 0 | Probable alpha-mannosidase I MNS4 |
| trEMBL | tr|B6SH10|B6SH10_MAIZE | 0 | alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193} |
| TAIR | AT5G43710 | 0 | Glycosyl hydrolase family 47 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000215 | 847639 | 913294 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008540
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01532.19 | Glyco_hydro_47 | 42 | 467 | 1.10E-115 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH47 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10085 | EDEM2 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004571 | Molecular Function | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.620 |
| SRR2545915 | Juvenile tuber | 11.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.330 |
| SRR5643514 | five period of Gastrodia elata | 9.190 | |
| SRR5643515 | five period of Gastrodia elata | 9.150 | |
| SRR5643524 | five period of Gastrodia elata | 9.410 | |
| SRR5643525 | five period of Gastrodia elata | 6.460 | |
| SRR5643528 | five period of Gastrodia elata | 7.080 | |
| SRR5643658 | five period of Gastrodia elata | 7.840 | |
| SRR5643659 | five period of Gastrodia elata | 7.280 | |
| SRR5643660 | five period of Gastrodia elata | 6.770 | |
| SRR5643661 | five period of Gastrodia elata | 6.580 | |
| SRR5643662 | five period of Gastrodia elata | 5.930 | |
| SRR5643663 | five period of Gastrodia elata | 6.560 | |
| SRR5643664 | five period of Gastrodia elata | 6.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.33 |
| Juven | Juvenile tuber | 11.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.77 | |
| Mother_Juven | Mother tuber of Juvenile | 19.85 |