Detail information of GWHGAAEX008541/evm.TU.scaffold_220.31


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG06548.00E-140G2/Mitotic-specific cyclin A
nrgi|695033209|ref|XP_009404125.1|1.46E-159PREDICTED: cyclin-A3-1-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q3ECW2|CCA34_ARATH2.00E-138Cyclin-A3-4
trEMBLtr|M0T612|M0T612_MUSAM7.00E-160Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P11130_001}
TAIRAT1G472308.00E-140CYCLIN A3;4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215915170917282+
Transcript Sequence

Network for GWHGAAEX008541

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.22Cyclin_N922201.60E-43
PF02984.18Cyclin_C2233452.50E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06627CCNA AMPK signaling pathway map04152
Cell cyclemap04110
Cellular senescencemap04218
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.800
SRR2545915Juvenile tuber1.410
SRP108465SRR5643513five period of Gastrodia elata4.030
SRR5643514five period of Gastrodia elata5.890
SRR5643515five period of Gastrodia elata2.650
SRR5643524five period of Gastrodia elata3.290
SRR5643525five period of Gastrodia elata0.170
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.180
SRR5643659five period of Gastrodia elata0.440
SRR5643660five period of Gastrodia elata0.630
SRR5643661five period of Gastrodia elata0.160
SRR5643662five period of Gastrodia elata0.470
SRR5643663five period of Gastrodia elata0.970
SRR5643664five period of Gastrodia elata0.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.510
SRR6049655Rhizomagastrodiae_C368-T10_good_17.190
SRR6049656Rhizomagastrodiae_C368-T07_good_18.820
SRR6049657Rhizomagastrodiae_C368-T07_good_14.530
SRR6049658Rhizomagastrodiae_C368-T04_good_13.590
SRR6049659Rhizomagastrodiae_C368-T04_good_11.230
SRR6049660Rhizomagastrodiae_C368-T01_good_14.300
SRR6049661Rhizomagastrodiae_C368-T04_good_15.290
SRR6049662Rhizomagastrodiae_C368-T01_good_111.640
SRR6049663Rhizomagastrodiae_C368-T01_good_16.740
SRR6049664Rhizomagastrodiae_C368-T10_good_110.100
SRR6049665Rhizomagastrodiae_C368-T10_good_110.100
SRP279888GastroGastrodia elata tuber 0.32
JuvenJuvenile tuber0.83
Mother_GastroMother tuber of Gastrodia elata 0.95
Mother_JuvenMother tuber of Juvenile 2.91