Detail information of GWHGAAEX008542/evm.TU.scaffold_220.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|343084445|ref|YP_004773740.1|1.00E-09single-strand binding protein [Cyclobacterium marinum DSM 745]
nrgi|672207686|ref|XP_008779813.1|1.37E-104PREDICTED: protein OSB1, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q9SX99|OSB1_ARATH3.00E-28Protein OSB1, mitochondrial (Precursor)
trEMBLtr|M0TZ77|M0TZ77_MUSAM7.00E-104Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P10680_001}
TAIRAT1G477202.00E-27Primosome PriB/single-strand DNA-binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215918855924346+
Transcript Sequence

Network for GWHGAAEX008542

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00436.24SSB761694.90E-15
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003697Molecular Functionsingle-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.110
SRR2545915Juvenile tuber13.490
SRP108465SRR5643513five period of Gastrodia elata9.130
SRR5643514five period of Gastrodia elata10.240
SRR5643515five period of Gastrodia elata9.420
SRR5643524five period of Gastrodia elata10.990
SRR5643525five period of Gastrodia elata11.590
SRR5643528five period of Gastrodia elata10.810
SRR5643658five period of Gastrodia elata11.060
SRR5643659five period of Gastrodia elata20.490
SRR5643660five period of Gastrodia elata22.600
SRR5643661five period of Gastrodia elata22.400
SRR5643662five period of Gastrodia elata18.910
SRR5643663five period of Gastrodia elata20.070
SRR5643664five period of Gastrodia elata17.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.600
SRR6049655Rhizomagastrodiae_C368-T10_good_111.470
SRR6049656Rhizomagastrodiae_C368-T07_good_111.300
SRR6049657Rhizomagastrodiae_C368-T07_good_19.050
SRR6049658Rhizomagastrodiae_C368-T04_good_17.900
SRR6049659Rhizomagastrodiae_C368-T04_good_18.040
SRR6049660Rhizomagastrodiae_C368-T01_good_19.740
SRR6049661Rhizomagastrodiae_C368-T04_good_112.580
SRR6049662Rhizomagastrodiae_C368-T01_good_113.670
SRR6049663Rhizomagastrodiae_C368-T01_good_112.010
SRR6049664Rhizomagastrodiae_C368-T10_good_19.960
SRR6049665Rhizomagastrodiae_C368-T10_good_19.960
SRP279888GastroGastrodia elata tuber 36.68
JuvenJuvenile tuber21.60
Mother_GastroMother tuber of Gastrodia elata 19.33
Mother_JuvenMother tuber of Juvenile 15.27