Detail information of GWHGAAEX008546/evm.TU.scaffold_220.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|460376494|ref|XP_004234033.1|2.11E-77PREDICTED: MATH domain-containing protein At5g43560-like [Solanum lycopersicum]
Swissprottr|Q8RY18|Y5436_ARATH1.00E-65MATH domain-containing protein At5g43560
trEMBLtr|K4BDW7|K4BDW7_SOLLC8.00E-78Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g005430.2.1}
TAIRAT5G435604.00E-65TRAF-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000021511230201132442+
Transcript Sequence

Network for GWHGAAEX008546

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00917.25MATH611715.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.670
SRR2545915Juvenile tuber10.950
SRP108465SRR5643513five period of Gastrodia elata15.460
SRR5643514five period of Gastrodia elata18.470
SRR5643515five period of Gastrodia elata16.050
SRR5643524five period of Gastrodia elata15.410
SRR5643525five period of Gastrodia elata20.730
SRR5643528five period of Gastrodia elata16.070
SRR5643658five period of Gastrodia elata20.390
SRR5643659five period of Gastrodia elata17.600
SRR5643660five period of Gastrodia elata23.040
SRR5643661five period of Gastrodia elata13.930
SRR5643662five period of Gastrodia elata19.430
SRR5643663five period of Gastrodia elata21.510
SRR5643664five period of Gastrodia elata22.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.310
SRR6049655Rhizomagastrodiae_C368-T10_good_126.470
SRR6049656Rhizomagastrodiae_C368-T07_good_111.700
SRR6049657Rhizomagastrodiae_C368-T07_good_112.560
SRR6049658Rhizomagastrodiae_C368-T04_good_13.980
SRR6049659Rhizomagastrodiae_C368-T04_good_12.340
SRR6049660Rhizomagastrodiae_C368-T01_good_15.680
SRR6049661Rhizomagastrodiae_C368-T04_good_10.890
SRR6049662Rhizomagastrodiae_C368-T01_good_16.720
SRR6049663Rhizomagastrodiae_C368-T01_good_12.380
SRR6049664Rhizomagastrodiae_C368-T10_good_111.510
SRR6049665Rhizomagastrodiae_C368-T10_good_111.510
SRP279888GastroGastrodia elata tuber 24.88
JuvenJuvenile tuber37.91
Mother_GastroMother tuber of Gastrodia elata 21.68
Mother_JuvenMother tuber of Juvenile 41.05