Gene detail

Detail information of GWHGAAEX008547/evm.TU.scaffold_221.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	2.00E-30	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|743772771\|ref\|XP_010916697.1\|	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Elaeis guineensis]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	8.00E-112	Protein TRANSPARENT TESTA 12
trEMBL	tr\|M0TRG6\|M0TRG6_MUSAM	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT5G65380	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000219	125610	163924	+

Transcript Sequence
>GWHTAAEX008547 ATGAAGGAGGTAATCCTGCCAAGGAATGGAGGATGGGAGGAGAGGAAGAGGAGGGCGTGGAGAGAGTGGAAGAGGATGTGGAGGGTGGCCGGTCCGGCTGCCTTCAGCCGGGTTGTGACGTACAGCGCCAACGTCATAACTCAGGCCTTTGCTGGCCATCTCGGAGACCTCCAACTCGCATCCATGTCCATTGCAAATAACGTCGTTCTTGGCTTCAGCTTTGGCCTTTTGCTGGGCATGGCGAGCGCAATGGAGACTCTATGCGGGCAGGCGTACGGAGCAAAGCAGCACAGCATGCTGGGAATATACATGCAGCGTTCGTGGCTGGTGCTGTTCGCATGCACCACCGCCGTTCTGCCGCTGTATTTCTTTACCTCCGCTATACTGGAACTTTGCGGGCAGCCGCATGAACTGGCTGCCATGGCGGGGAAGGTGTCGGTGTGGCTCATACCTCTGCACTACTCCTTGGTAATCCTTCTACCCATGCAGCGATTCCTGCAGTGCCAGCAGAGGAATTCTGTGCACGCCGTTGCGTCTGCTGCTGCGCTGGTATTGCACGTGCTCATCACGTGGCTTTTCGTCTGCCATTTCAAGCTGGGGCTCTTTGGCACGGCTATGACGCTGAACTTCTCGTGCTGGGTGGCCGTGGCTGGCCTCCTGGGATATATTTTCTGCGGTGGCTGTGAGGACACGTGGCTGGGTTTCTCTGCGGAGGCCTTTGCTGGCCTCTGGGAGTTTCTCAGGCTCTCCGTTGCGTCCGGAATAATGCTATGCTTGGAGAACTGGTACTATAGAATATTGATTCTTCTTGCTGCCAAAATAAAGAATGCTGAAATTGCAGTGGATGCCCTCTCCATATGCATGAGCATTAATGGCTGGGAGATGATGATTCCTCTCGCCTTCTTCACAGCAGCAGGAGTGAGGGTTGCAAATGAGCTTGGAGCCGGAAACAGCAGTGGTGCAAAATTTGCAGCCACAATCGCTATCATAACCTCAGGCATCATCAGAGTTATTTTCTCCGTGCTGATATTTACCCTTCACGGAGAGCTCGCGCACATCTTCACAGCAAGCGGCGCTGTCATCGGCGCCGTCGATCACCTCTCTACCTTGTTAGCCATCACCGTTCTTCTTAACAGCGTTCAGCCTGTTCTTTCAGGCATCGCAGTTGGTTCAGGGTGGCAATCTATTGTGGCCTATATTAACATTGGATCATATTACTTGATTGGGATTCCTGTTGGTGTTCTTATGGGGTGGTTCTTCCATTATGATGTTCTGGGATTATGGGCTGGCATGATTGGAGGGAATGCTGTGCAGACACTGATTCTGTCTGTTGTGACCATCCGATGCGATTGGGATAAGCAGGCATTAATGGCTTGCTCACGAGTCAACAAAATTTCTTTGGCCGATGAGGAACAAGAGAATTGATAATTTTATATAAAAACCTTATCTGAATTGATGTGCTTATGATCCAATTATCTATCAATATGTTGCCTTTGAAACAAAAGCTATCTATTGGCTTAATTAATGCATACCATCTCCTTTGACTTCC

Network for GWHGAAEX008547

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	32	192	6.70E-27
PF01554.17	MatE	254	414	2.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0015297	Molecular Function	antiporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.200
SRP064423	SRR2545915	Juvenile tuber	0.060
SRP108465	SRR5643513	five period of Gastrodia elata	0.210
	SRR5643514	five period of Gastrodia elata	0.350
	SRR5643515	five period of Gastrodia elata	0.540
	SRR5643524	five period of Gastrodia elata	0.610
	SRR5643525	five period of Gastrodia elata	0.100
	SRR5643528	five period of Gastrodia elata	0.050
	SRR5643658	five period of Gastrodia elata	0.440
	SRR5643659	five period of Gastrodia elata	0.040
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.790
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.00