Detail information of GWHGAAEX008557/evm.TU.scaffold_222.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294674230|ref|YP_003574846.1| | 1.00E-74 | galactokinase [Prevotella ruminicola 23] |
| KOG | KOG0631 | 3.00E-149 | Galactokinase |
| nr | gi|567922392|ref|XP_006453202.1| | 0 | hypothetical protein CICLE_v10008332mg [Citrus clementina] |
| Swissprot | tr|Q8VYG2|GALAK_ARATH | 0 | Galacturonokinase |
| trEMBL | tr|V4UJV3|V4UJV3_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR66442.1} |
| TAIR | AT3G10700 | 3.00E-149 | galacturonic acid kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000228 | 128687 | 228580 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008557
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10509.8 | GalKase_gal_bdg | 70 | 105 | 9.30E-09 |
| PF00288.25 | GHMP_kinases_N | 181 | 237 | 2.70E-05 |
| PF08544.12 | GHMP_kinases_C | 359 | 435 | 3.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K18677 | GALAK | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006012 | Biological Process | galactose metabolic process |
| GO:0046835 | Biological Process | carbohydrate phosphorylation |
| GO:0004335 | Molecular Function | galactokinase activity |
| GO:0005534 | Molecular Function | galactose binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor |
| GO:0016301 | Molecular Function | kinase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.360 |
| SRR2545915 | Juvenile tuber | 19.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.030 |
| SRR5643514 | five period of Gastrodia elata | 6.510 | |
| SRR5643515 | five period of Gastrodia elata | 7.480 | |
| SRR5643524 | five period of Gastrodia elata | 5.620 | |
| SRR5643525 | five period of Gastrodia elata | 13.920 | |
| SRR5643528 | five period of Gastrodia elata | 9.320 | |
| SRR5643658 | five period of Gastrodia elata | 11.260 | |
| SRR5643659 | five period of Gastrodia elata | 5.720 | |
| SRR5643660 | five period of Gastrodia elata | 7.180 | |
| SRR5643661 | five period of Gastrodia elata | 6.140 | |
| SRR5643662 | five period of Gastrodia elata | 7.940 | |
| SRR5643663 | five period of Gastrodia elata | 7.630 | |
| SRR5643664 | five period of Gastrodia elata | 7.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.40 |
| Juven | Juvenile tuber | 7.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.03 | |
| Mother_Juven | Mother tuber of Juvenile | 5.42 |