Detail information of GWHGAAEX008560/evm.TU.scaffold_222.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4731 | 0 | Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains |
| nr | gi|743878708|ref|XP_010908243.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: cytochrome b561, DM13 and DOMON domain-containing protein At5g54830-like [Elaeis guineensis] |
| Swissprot | tr|Q9FFU6|B561A_ARATH | 0 | Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 (Precursor) |
| trEMBL | tr|M0S599|M0S599_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P05080_001} |
| TAIR | AT5G54830_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000228 | 563586 | 566264 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008560
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10517.8 | DM13 | 36 | 132 | 1.40E-08 |
| PF03351.16 | DOMON | 173 | 317 | 7.20E-15 |
| PF03351.16 | DOMON | 511 | 631 | 1.00E-27 |
| PF03188.15 | Cytochrom_B561 | 674 | 802 | 7.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.800 |
| SRR2545915 | Juvenile tuber | 8.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.320 |
| SRR5643514 | five period of Gastrodia elata | 8.050 | |
| SRR5643515 | five period of Gastrodia elata | 10.950 | |
| SRR5643524 | five period of Gastrodia elata | 8.700 | |
| SRR5643525 | five period of Gastrodia elata | 11.020 | |
| SRR5643528 | five period of Gastrodia elata | 12.040 | |
| SRR5643658 | five period of Gastrodia elata | 11.830 | |
| SRR5643659 | five period of Gastrodia elata | 13.640 | |
| SRR5643660 | five period of Gastrodia elata | 14.320 | |
| SRR5643661 | five period of Gastrodia elata | 14.360 | |
| SRR5643662 | five period of Gastrodia elata | 14.700 | |
| SRR5643663 | five period of Gastrodia elata | 12.670 | |
| SRR5643664 | five period of Gastrodia elata | 10.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.55 |
| Juven | Juvenile tuber | 9.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.64 | |
| Mother_Juven | Mother tuber of Juvenile | 16.67 |