Gene detail

Detail information of GWHGAAEX008566/evm.TU.scaffold_222.19

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743767034\|ref\|XP_010913766.1\|	0	PREDICTED: uncharacterized protein LOC105039336 isoform X1 [Elaeis guineensis]
trEMBL	tr\|B9HB08\|B9HB08_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE91645.1}
TAIR	AT4G30130	2.00E-152	Protein of unknown function (DUF630 and DUF632)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000228	790022	798105	+

Transcript Sequence
>GWHTAAEX008566 AGGGCAGGGGTAGGTCATGCAAATAACTGTAATTCCTGGGGCATTCTTAGAAAAAAGTAATATTCTTGCTTGTCCGCTGCCCGCCTTTTTATGCCCTCGTATCGGCGTTATTTTACTCCTGGCTTTATGTTCATTCTTCCTTTGAAATCATTTGACCGTTGGTGCTGTGCGCTCGTCGTCCCTGCCTTTCCTTCTCTACTGTTCAAAACTTCTCCAAAGGAAAAAAATACCGGTTTCTTCATCGTTCGGGTATCCATTTCTTTCCTAAGCGAAAAATGCAGAGTTAGGGGGAAGTATAATTGATTATTCAGATGCATGCAGAACTACAGAATCACATGAGTTTCGTGAAGCATCTGCATTTTTTCTTCATTAATTTTGAGTTCGATTCGAGCCTAAAGAATTCATAGTAGTCCTGAGATGGGATGTTCGGCCTCTAAGCTGGAAGACGAGGAAGCAGTTAAGCTCTGTAAAGATCGAAAGAACTTCATTAAGCATGCTATCGAGCACAGAAACAGATTTGCATCTAGTCATGTGGCTTATATTCAGTCAATGAGACGGGTTTCACGTGCTCTTCTACAATATGTCGTGGCTGATGATCTTCATGAGTTTCTCTCTGATTCCTATATTACTCCTCCATTTACTCCGGTTAAGGGACTTAGCCCTGAAATCAGAGCCATTCCTCTTAAGTTCTGCACACCATCATCAAATGGGTCTGTAAAGAGCGGCGACGTTCGCACTGTAAATTGCCTGAGATCTGGTGGAAATCAATCGGTTGCTGAGGAATGGCCTGAGACCCATGAAACTGTGCATATTGAAACATATTATCCTATGGAAAATTATGGCATGGATGGTTTCTTTGCATCACAATCATCTCCTTTAAATAGATCATCATTATTCTCTTCTCCTCGTAATAGATCAGGCTACCGATCACCGTCACCTCAAGCTTCAAGGTGGGATTATTTTTGGAATCCTTTCTCCTCATTGGATCAGTACGAATATCCTTCAAGGAGCAGCTTTGATAGGATATTAAATGATGAAGATATAGCTGGACTGAGGAGGGTTAGAGAGGCAGAAGGGATACCTGAATTAGAGGAAGACATAGATAATTATGATGGCTACAATGATTATGATGATGATAATCATCATCCTCATCACTATCATGAAGCAAGGGGCACAATGTTTGGGAACGCCGAATCAACAAACAATACCCCAGAGGTCGAACGCAAGCATGCTGGAGTTCAAGTTAGTGATGAAAGTCCTGTTGCTGCTTGTGAAGAGGGTCAAAAGGTGCAAGAGGTAAAGGAGTTAAAGTTCAAAGGGCCACAGAGCATTGAGGTTTCAGAAAATCAAAATATAATAGAACATGCTCCAAATCAGCATCAGGTGGCAGAGAGCAGCAATGCAGAAGAAACTCCGGGATTTACTGTGTATGTGAACAGAAGACCTACTAGTATGGCAGAGGTGATGAAGGACGTGGAGAACCAGTTTGCGAGAATCTGTGATTGCGCTCATGAGATCTCAGTGATGCTGGAAGCAGTTCGAGCGTGGCACTCTCCAGCTTCAAATGAACTTTCAGCGGTGAGAATGTTGAATCCAATTGCATTATTTCGATCAACCCCATCACTTTCATCGTCCTCCAAGTCCACTCGTGCTACAGGTAAGCCAAAAGGGGATGCTGATGAGTGCAGTAGTGATTATTCAGAAGAGCTTTACATGGTCTCTGGTAGCCACAAATCTACCCTTGACAAACTATATGCATGGGAGAAGAAACTATATGAACAAGTAAAGTTTGGCGAACGTGTGCGAATAGCGTACGATAAGAAATGCATGCAGCTGAGGAATCATGATATCAAAGGGGAGGAGCCTTCTGTAGTTGATAAGACAAGACTAGCCATAAGGGATCTTCACACCCATTTACAAGTTTCTATTCGTACAGTTGGATCAATTTCCAAAAGAATTGAATTGCTGAGAGATGGAGAATTGTACCCTCAGCTCATGGAGATGATACAAGGGTTGTGCCGCATGTGGAAAACAATGGCGAACTGCCACCAAATCCAGAAGCGTACCATAGAAGAAGCCAAGCTGCTGCTATTCTCGAGCGCTGCAGCAGCAGCCTCCTGCCCTGCAGCAGCAAAATCCCCTCATCCCGCAGCTAATCTGGCCGCAGAGCTGCGAAACTGGCGCTCCTCCTTCGCCGAATGGATCGGATTCCAGCGATGCTACACTCACGCGCTGGCCGGCTGGGCTTCGCGCTGCGCCCCCACCGCCGACGGCGAGGAATGTGCGGCGGTTCCTGCGGCGGCGCGGGTGTGCACTCGGTGGTCGAGGTCAATGGATTCCGTGAGCGAGGAGCGGGCTCTGGATTGGATGGATTTTTTTGCCGCGGGAATCGCGTCTGTTAGCGCTCAGCAGCGGCAGGCGGCCGAGGGTCCGCCAGCGGCGGAGGAACCGCCTTCGCCGGCGGCAGATGTGGGGCCGAAGGTGCTCTGTGCGGGGTTGTCCGTGACGGTTGGGTCCTTGGCGGACTTCGCTGTGGCTTCAGCCAAAGGGTACGATGCCCTTCTGAGGAGCTTCGAAGGCAGGGGCGCGGATATTGTAATGTAGAAGGGGGGATAGATAGGGTTGTAAATGTTCGGATGTATTAGGAGTAAGAGAACTTTTGTCGCGGTGTGCCTGCGCGCGCCCGCGCCTAATTGTTGATTTATTATATCTTAAAATAATTATTGTCTT

Network for GWHGAAEX008566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04783.11	DUF630	1	58	7.10E-25
PF04782.11	DUF632	346	659	2.90E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.480
SRP064423	SRR2545915	Juvenile tuber	2.370
SRP108465	SRR5643513	five period of Gastrodia elata	1.730
	SRR5643514	five period of Gastrodia elata	2.750
	SRR5643515	five period of Gastrodia elata	1.330
	SRR5643524	five period of Gastrodia elata	2.140
	SRR5643525	five period of Gastrodia elata	8.880
	SRR5643528	five period of Gastrodia elata	5.230
	SRR5643658	five period of Gastrodia elata	8.180
	SRR5643659	five period of Gastrodia elata	3.640
	SRR5643660	five period of Gastrodia elata	2.260
	SRR5643661	five period of Gastrodia elata	2.430
	SRR5643662	five period of Gastrodia elata	2.900
	SRR5643663	five period of Gastrodia elata	4.890
	SRR5643664	five period of Gastrodia elata	3.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.230
SRP279888	Gastro	Gastrodia elata tuber	6.18
	Juven	Juvenile tuber	2.23
	Mother_Gastro	Mother tuber of Gastrodia elata	1.78
	Mother_Juven	Mother tuber of Juvenile	1.28