Gene detail

Detail information of GWHGAAEX008567/evm.TU.scaffold_222.20

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1488	Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)
nr	gi\|743809957\|ref\|XP_010928760.1\|	PREDICTED: pumilio homolog 5-like [Elaeis guineensis]
Swissprot	tr\|Q9LJX4\|PUM5_ARATH	Pumilio homolog 5
trEMBL	tr\|D7U9F8\|D7U9F8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39372.3}
TAIR	AT3G20250	pumilio 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000228	810048	881061	+

Transcript Sequence
>GWHTAAEX008567 GAATCGGCGAATCTGGTTCATCTATCAATCAATCAGATCGCTGATATCGAACGATTTTCGGATTCCGGTTCGTGGCTTAGAACGACTTCAAAAGACCGCTTCTTTCGTCAAAGCCGGAGATAAATAACAGAGAAAATTGTAATTAATTAAGGAAACCAAATTTTGAGGGTTTTAGAATTGACATCGGGTTTCGAGGAGGAAGAAACCTCGAGAGGAAGCTGACTTCCTCCTCCTACCATTCGGTCGCTGTTTTTGCTGTTGTACATCTCGAAATTCTGCGACAAATCTAGTTCGCGGCGTCTGCACAGGATAAAGGTGCTAGGGTTTTGTTTCGTAGCATCTAATCGGGCAGGTTGATAAACTGATGCGAGCTGGATGTAGCTCTGTAAATAATGCAATGCAATTTATTATCACTTCTTTGGCTTTCGGATTTTGCACCTCTGCTTACCTTCTCCTCAATCAACATTGCCATTAGCTTAAGCCAGGAGTTGAGGGATTACCTGGTGGTGCTGTTATTTGTATAAATTATTTATTTAGGCAATATGGCAACTGATATTCCTGTGAGATTAATTGGAAACAATGCTGTTGGAAACTGGCCTGCCAACATGGATATTACCTCACTTTCAGGTAACCAATTGGTTACTGCCCCTAGCAGAAGTGGCAGTGCCCCTCCCAGCATGGAAGGTTCTAGTGTAGCAATTCATGACTTGGGAGGTCAGCGAAACTTCCAATTGGATGCAATCTTTGAAAACTCGAACATTGGGTTTGAAAGATGTCAGTCTGAAGAGCATCTTCGAGCTGATCCTGCTTATGTAGCATACTATTACTCCAATGTTAATTTAAACCCACGAATTCCTCCTCCTTTAGTCTCAAAGGAGAAGCGTCACTTGACACACCGCATTGGTGACAATTGGAGAATTCCTTTGTTGGATGATGTTGACAAAAGATATTTTCCAGCATCACGACTTGCTCTTCCAACTCATGAGGAGGAACATGAAGATGTTAGATCGCCCAGTTCAGAATTTAGTGATGACATGCTACAAAAAATTTCTAGCTCCATGCCCGGACAGTCATCTTCTCCGTTGGGCCGCTATAAAAGTATTGTTGATCTGATTCAGGAAGATTTTCCTAGGACTCCCTCTCCTGTATATAGTAGTCAGCCCCGCTTATCAAGTCATGAGCTAACGGAGCAGATGCAGACAGCTAATGCTGATACCTGTGCAGACTCCAACACACCCAAAGATTCCAGAAGTAATATGGCTAAATCTGACCTAAAAGCATCATCGGCCACTGTTCATGTTTCTACATCTCCAAGTACAAAAGCACCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGTATCAATTGTATGTTCCAGCACACCTGCAGATACTTGTAAACTACATCTAAGCCAGATTGAGTTAAATACGGAAAACAGGGTGTTGGGAAACAACATTCATCCTGTTCGTGAAGTTGCTACAAGTACTGGGAATATCATTAAAGATATGAAAAGTTTGAAAATATCAAACGATGCTCATAGAAGTCAAGCCCCACGACAAAACCATCACCAAAGTAACTTGCAAAGTGGATCTTTGTTTCCAGTTCATTTTGGTCAGTCACATATTGCCAGTCAAGCAATGCACTGCTCAAATCATACTGATCATTATCTTCACAGTCAGCCAAAGTTATCTTCTGTGGAACAACAGCCTGTGCTGCAGTCAGCTGGCATTGTTCCTCCACTTTATGCCACAGCAGCTGCCTTTGGAGCTCCATATTACCCTAATCTCCAACCATCAAACTTGTTTACTCCACAGTTTGGTCTTGGTGGTGTCACTGTGAATGCTTCCCTTCTGCCACCTTTCTTTTCTGGATATCCTTATAATGCTATTCAGATTCCTTTCGAAAATTCCTCTAGCTCTAACTACAATATGAGGACTTCTAGTGTTTCCTCCAGAGAAAATGTTGTTCCTGGATATTATGGGCAAATTGGAGTTGCAAGTCAACATTCATATACTGAGCCACTGTATGTGTCTTATTTTCAGCAGCCTTCTGCACATCCTTATGCTACTACAGGTCAGTTCGATGCAACAGCTTCAAGGGGAAGTGCTATTGGGGGATCACAAGGTTTTGATCTACAAAAAGGGTTATTGCCTTATACTTTTCTGGCAGATCAAAGCCTTCAGCCCCTGAGATCAGGATCTGTTAACTCTCCAAATGTCAGGAAAGGTGGAGCTGCTACTACAAATTTTTATGGGAATCCCACAAACCTCAGTCTCTTCATGCAATATCCATCCTCTACATTAACCAGTCCTGCTTATCCTCTACACCTACCAGCAAGTAATTCGGGAATTTCTGGCAAACAAAATGAGTGCAATAGGTCAGCTGGAATCTCTTTTAGGGCTGGAGGCGCTTATCCTGGTTGGAAAAGTCCACGATTGCATGATAAAGTTGATGATTCAAAATTACACTCATTTCTTGAAGAGTTGAAAACCAGCAAATCCCGTAGATACGAGTTATCGGACATTGCAGGACGCATTGTTGAGTTCAGTGCTGACCAACATGGGAGTCGATTTATTCAGCAGAAGTTGGAAAGCTGTAATGTTGAAGAGAAGGCATCTGTTTTCCAAGAAGTTCTCCCACATGCTTCAACATTGATGACTGATGTATTTGGGAATTATGTAATTCAGAAGTTTTTTGAGCATGGAAGCCCCGAGGAGAGGAAGGAACTTGCAAATCAGCTTGTTGGGCGTGTCTTGCCTCTAAGCCTTCAAATGTATGGCTGTCGAGTGATTCAAAAGGCTCTCGAAGTGATTGATATTGACCAAAAAACGCACCTTGTATCTGAACTGGATGGGCATGTTTTGCGATGTGTTCGTGATCAAAATGGAAACCATGTAATTCAGAAGTGCATTGAATGTGTGCCAACCGAGAGAATTGGCTTCATCATATCTGCTTTTCGGGGGCATGTTGCTACACTCTCTATGCATCCCTATGGATGCAGAGTTATTCAGAGAGTGTTGGAGCATTGTACTGATGAATTGCAAAGTAGTTGCATTGTCGATGAAATTTTACAATCTGCTTGTATTCTAGCTCAAGATCAGTATGGAAATTATGTAACTCAGCATGTTTTGGAGAGTGGAAAGCCTCTAGAAAGGAGCCAAATTATCAATAAACTTTCTGGTCAAGTTGTACAGATGAGCCAGCATAAGTTTGCTTCCAATGTTATTGAGAAGTGCTTAGAGCATGGCAGTTCTGCCGAAAGGGAACAGTTGATTATAGAAATTGTTGGGCAGACTGAAGGGAATGACAATTTACTGATTATGATGAAGGATCAATTTGCAAATTATGTAGTTCAGAAGATGCTTGACGTGTGTACAGAAACTCAAAGAGAGCTTTTACTTGGTTGTATACGGTCACACTCGCAAGCTTTGAAGAAATATACCTATGGTAAACATATAGTTTCCCGGGTAGAGCAGTTCTGTTGTGGTGGAGAAGAAAACTCTTCAGAATTCTGAAAAACCAAAGTAGGGCACACTTTGGTATATTAGTTGTATCTGTTGGAAGATTCTGATCGGCCAACTTTATTGTCTGCAGCGACTGACTCCTGGCATTAAAGCGTTTGATGGCACTCCTCCGCAGGTATCTGCTGGAGATCATCATTTGGTACATATTAAGCCTGCATTGTATTAGTGGTAAAATATCTTTATATTTATACTGTATAATATCGCTTAATGGTATGGTATATATATATATATATATATAGTACCTGATAAATTCTAGTTCAGATTTCTTAGTATTAGTTATCTCTGCATATTATATGTACTGATCTGATAAGTAAAAATCTTTAGTTGATGTTGGTTGTTGGAAGATTGTATTGTTCCAATTTCCATCAAAACTAGTTCTCCGCTGGTTCTTCCCCTGTTACAATTAAGCATTTAAAT

Network for GWHGAAEX008567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00806.18	PUF	662	690	0.00062
PF00806.18	PUF	697	728	2.00E-08
PF00806.18	PUF	733	762	0.00021
PF00806.18	PUF	769	801	9.30E-07
PF00806.18	PUF	805	837	8.10E-07
PF00806.18	PUF	877	911	2.90E-08
PF00806.18	PUF	923	953	1.70E-08

Protein Sequence

>GWHPAAEX008567
MATDIPVRLIGNNAVGNWPANMDITSLSGNQLVTAPSRSGSAPPSMEGSSVAIHDLGGQRNFQLDAIFENSNIGFERCQSEEHLRADPAYVAYYYSNVNLNPRIPPPLVSKEKRHLTHRIGDNWRIPLLDDVDKRYFPASRLALPTHEEEHEDVRSPSSEFSDDMLQKISSSMPGQSSSPLGRYKSIVDLIQEDFPRTPSPVYSSQPRLSSHELTEQMQTANADTCADSNTPKDSRSNMAKSDLKASSATVHVSTSPSTKAPAAAAAAAAAAVSIVCSSTPADTCKLHLSQIELNTENRVLGNNIHPVREVATSTGNIIKDMKSLKISNDAHRSQAPRQNHHQSNLQSGSLFPVHFGQSHIASQAMHCSNHTDHYLHSQPKLSSVEQQPVLQSAGIVPPLYATAAAFGAPYYPNLQPSNLFTPQFGLGGVTVNASLLPPFFSGYPYNAIQIPFENSSSSNYNMRTSSVSSRENVVPGYYGQIGVASQHSYTEPLYVSYFQQPSAHPYATTGQFDATASRGSAIGGSQGFDLQKGLLPYTFLADQSLQPLRSGSVNSPNVRKGGAATTNFYGNPTNLSLFMQYPSSTLTSPAYPLHLPASNSGISGKQNECNRSAGISFRAGGAYPGWKSPRLHDKVDDSKLHSFLEELKTSKSRRYELSDIAGRIVEFSADQHGSRFIQQKLESCNVEEKASVFQEVLPHASTLMTDVFGNYVIQKFFEHGSPEERKELANQLVGRVLPLSLQMYGCRVIQKALEVIDIDQKTHLVSELDGHVLRCVRDQNGNHVIQKCIECVPTERIGFIISAFRGHVATLSMHPYGCRVIQRVLEHCTDELQSSCIVDEILQSACILAQDQYGNYVTQHVLESGKPLERSQIINKLSGQVVQMSQHKFASNVIEKCLEHGSSAEREQLIIEIVGQTEGNDNLLIMMKDQFANYVVQKMLDVCTETQRELLLGCIRSHSQALKKYTYGKHIVSRVEQFCCGGEENSSEF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	109.340
SRP064423	SRR2545915	Juvenile tuber	117.350
SRP108465	SRR5643513	five period of Gastrodia elata	52.020
	SRR5643514	five period of Gastrodia elata	51.510
	SRR5643515	five period of Gastrodia elata	48.000
	SRR5643524	five period of Gastrodia elata	48.770
	SRR5643525	five period of Gastrodia elata	49.900
	SRR5643528	five period of Gastrodia elata	42.050
	SRR5643658	five period of Gastrodia elata	56.780
	SRR5643659	five period of Gastrodia elata	59.600
	SRR5643660	five period of Gastrodia elata	64.370
	SRR5643661	five period of Gastrodia elata	56.590
	SRR5643662	five period of Gastrodia elata	55.280
	SRR5643663	five period of Gastrodia elata	59.750
	SRR5643664	five period of Gastrodia elata	63.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	62.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	70.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	76.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	65.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	52.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	58.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.020
SRP279888	Gastro	Gastrodia elata tuber	80.13
	Juven	Juvenile tuber	83.89
	Mother_Gastro	Mother tuber of Gastrodia elata	53.61
	Mother_Juven	Mother tuber of Juvenile	65.92