Detail information of GWHGAAEX008570/evm.TU.scaffold_222.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17452.00E-93Histones H3 and H4
nrgi|565487241|ref|XP_006301260.1|2.64E-92hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
Swissprottr|Q76MV0|H32_TOBAC5.00E-94Histone H3.2
trEMBLtr|K3YZS7|K3YZS7_SETIT3.00E-92Uncharacterized protein {ECO:0000313|EnsemblPlants:Si019787m} (Fragment)
TAIRAT5G653602.00E-93Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000228964793965665-
Transcript Sequence

Network for GWHGAAEX008570

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module10

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone11329.00E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.650
SRR5643514five period of Gastrodia elata1.290
SRR5643515five period of Gastrodia elata0.800
SRR5643524five period of Gastrodia elata0.530
SRR5643525five period of Gastrodia elata0.860
SRR5643528five period of Gastrodia elata0.540
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata0.090
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.100
SRR5643662five period of Gastrodia elata0.190
SRR5643663five period of Gastrodia elata0.220
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.630
SRR6049655Rhizomagastrodiae_C368-T10_good_157.340
SRR6049656Rhizomagastrodiae_C368-T07_good_110.370
SRR6049657Rhizomagastrodiae_C368-T07_good_17.300
SRR6049658Rhizomagastrodiae_C368-T04_good_13.660
SRR6049659Rhizomagastrodiae_C368-T04_good_12.660
SRR6049660Rhizomagastrodiae_C368-T01_good_15.830
SRR6049661Rhizomagastrodiae_C368-T04_good_15.140
SRR6049662Rhizomagastrodiae_C368-T01_good_110.600
SRR6049663Rhizomagastrodiae_C368-T01_good_17.150
SRR6049664Rhizomagastrodiae_C368-T10_good_123.330
SRR6049665Rhizomagastrodiae_C368-T10_good_123.330
SRP279888GastroGastrodia elata tuber 1.93
JuvenJuvenile tuber3.52
Mother_GastroMother tuber of Gastrodia elata 2.63
Mother_JuvenMother tuber of Juvenile 0.71