Detail information of GWHGAAEX008580/evm.TU.scaffold_223.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-139 | FOG: PPR repeat |
| nr | gi|672162503|ref|XP_008801069.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g32630 [Phoenix dactylifera] |
| Swissprot | tr|Q8S8P6|PP180_ARATH | 2.00E-139 | Pentatricopeptide repeat-containing protein At2g32630 |
| trEMBL | tr|M0RRF5|M0RRF5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P11750_001} |
| trEMBL | tr|M0RRF5|M0RRF5_MUSAM | 9.00E-15 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P11750_001} |
| TAIR | AT2G32630 | 6.00E-139 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000222 | 632312 | 634350 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008580
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 139 | 164 | 0.76 |
| PF13812.5 | PPR_3 | 195 | 253 | 4.50E-11 |
| PF13041.5 | PPR_2 | 277 | 325 | 3.90E-15 |
| PF12854.6 | PPR_1 | 342 | 370 | 3.70E-08 |
| PF01535.19 | PPR | 385 | 414 | 0.028 |
| PF13041.5 | PPR_2 | 416 | 465 | 2.40E-18 |
| PF12854.6 | PPR_1 | 482 | 515 | 1.90E-09 |
| PF13041.5 | PPR_2 | 522 | 568 | 6.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.860 |
| SRR2545915 | Juvenile tuber | 0.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.850 |
| SRR5643514 | five period of Gastrodia elata | 0.780 | |
| SRR5643515 | five period of Gastrodia elata | 0.860 | |
| SRR5643524 | five period of Gastrodia elata | 0.800 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.190 | |
| SRR5643658 | five period of Gastrodia elata | 0.030 | |
| SRR5643659 | five period of Gastrodia elata | 1.290 | |
| SRR5643660 | five period of Gastrodia elata | 0.890 | |
| SRR5643661 | five period of Gastrodia elata | 1.120 | |
| SRR5643662 | five period of Gastrodia elata | 1.160 | |
| SRR5643663 | five period of Gastrodia elata | 0.970 | |
| SRR5643664 | five period of Gastrodia elata | 1.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.85 |
| Juven | Juvenile tuber | 0.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.08 | |
| Mother_Juven | Mother tuber of Juvenile | 0.08 |