Detail information of GWHGAAEX008585/evm.TU.scaffold_224.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33685.00E-92Transport protein particle (TRAPP) complex subunit
nrgi|672142320|ref|XP_008795018.1|9.98E-111PREDICTED: trafficking protein particle complex subunit 1-like [Phoenix dactylifera]
trEMBLtr|M0T114|M0T114_MUSAM2.00E-106Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P23390_001}
TAIRAT1G511605.00E-92SNARE-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000231189524216539+
Transcript Sequence

Network for GWHGAAEX008585

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04099.11Sybindin331757.10E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0030008Cellular ComponentTRAPP complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.770
SRR2545915Juvenile tuber36.110
SRP108465SRR5643513five period of Gastrodia elata31.250
SRR5643514five period of Gastrodia elata31.200
SRR5643515five period of Gastrodia elata30.500
SRR5643524five period of Gastrodia elata28.670
SRR5643525five period of Gastrodia elata29.140
SRR5643528five period of Gastrodia elata34.340
SRR5643658five period of Gastrodia elata35.950
SRR5643659five period of Gastrodia elata39.690
SRR5643660five period of Gastrodia elata44.210
SRR5643661five period of Gastrodia elata39.190
SRR5643662five period of Gastrodia elata37.210
SRR5643663five period of Gastrodia elata38.470
SRR5643664five period of Gastrodia elata45.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.920
SRR6049655Rhizomagastrodiae_C368-T10_good_136.700
SRR6049656Rhizomagastrodiae_C368-T07_good_135.700
SRR6049657Rhizomagastrodiae_C368-T07_good_145.810
SRR6049658Rhizomagastrodiae_C368-T04_good_126.580
SRR6049659Rhizomagastrodiae_C368-T04_good_127.960
SRR6049660Rhizomagastrodiae_C368-T01_good_127.020
SRR6049661Rhizomagastrodiae_C368-T04_good_118.540
SRR6049662Rhizomagastrodiae_C368-T01_good_126.710
SRR6049663Rhizomagastrodiae_C368-T01_good_118.520
SRR6049664Rhizomagastrodiae_C368-T10_good_136.170
SRR6049665Rhizomagastrodiae_C368-T10_good_136.170
SRP279888GastroGastrodia elata tuber 33.80
JuvenJuvenile tuber45.77
Mother_GastroMother tuber of Gastrodia elata 26.36
Mother_JuvenMother tuber of Juvenile 33.80