Gene detail

Detail information of GWHGAAEX008586/evm.TU.scaffold_224.8

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	8.00E-29	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|747059406\|ref\|XP_011076083.1\|	0	PREDICTED: ABC transporter G family member 8-like [Sesamum indicum]
Swissprot	tr\|Q9SW08\|AB4G_ARATH	0	ABC transporter G family member 4
trEMBL	tr\|V4S4P6\|V4S4P6_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR35322.1}
TAIR	AT4G25750	0	ABC-2 type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000231	240193	242530	-

Transcript Sequence
>GWHTAAEX008586 AAAAGGCATAGCAGTAATGAGCTAATGAAATAATGTTCGCTCGCCATAAATCAGAGCACGATAGAGTTACCGAATATGGCTGGCTGGCTGTTTGTCACGAGGCGCATAAACCATGGAATTTTCTTTTTTATTTGTTTGATTCGCGTCCGCATAATAATTGTCGATTGCGATCTCGCACACATGCATGCATAAAAGGGATGTGTGATGATAGACACAAAGACACCGCCCCAGTTCTGAACCCATGGCCGATCTGCCTCCCATCCTCCCAACCACCGGGGGGCGGCGGCGGCACGACAGCCGCCCGTTCGACTCGTGCGTGCTCGCCGCCACGTCCATCTACTACGCGAAGCCGCCCTCGCCCTTCTCTTCCTCGTCGTCGGCGGCAGCAGCCAACATTCTGCGGGACGTGTCGTTGACTGCCCGTCCGGGGGAGCTCCTGGCTGTGGTGGGTCCGAGCGGAGCGGGCAAATCGACGCTCCTCGACATCCTGGCGGGGCGGACGTCCCCGAGCTCGGGCCACGTTCTCCTGAACTCCTCGCGTCTGCGGCCGTCGTGCATCCGCCGGCTCTCCGCACACCTCCCGCAGCACGACCAGTGCCACGTGCCCCACCTCACCGTCTCCGAGTCGTTCCGCCTCACAGCCCGCCTCGTCGCCCCGTCGTCCGACCCGTCGTCGCTCCTCTCGGACCTCCGCCTCACCCACCTCGCCGACTCCCTCATCCCCGGCTCGCTGTCCGGCGGTGAGCTCCGGCGCGTCTCCCTTGGCCTCGCCCTCCTCCGCCGCCCCGCGGTTTTAATACTCGACGAGCCGACCTCAGGGCTCGACAGCTCCTCTGCCCTCCTCGTGCTTCGCTCCCTCCGGGAGCTGACGACCTCCTCTCACCGCAGACCCCCGGTGGTCCTCTCCATCCATCAGCCCTCCTCCCTCCTCCTCTCGTCCATCGACTCCTTCCTCCTCCTCTCTCAAGGAGCCGTCCTCCACCACGGCGACCTCCCCTCCCTCTCCTCCTTCCTCGCCTCGCACGGCCTCCCCCGATCCCCCGACATCAACCCCCTCGAGCTCGCCCTTCAATCCCTCCCTCTCCTCGTTCCTCCGACCGCCGAAGGGGCAATCTGTTCCCCCGCGCCCGCCCTGGCCGCGTGCCCCCTCAGCTATCCGAGCCCGCGGGCGCGGGAGATCTCGGTCCTCCACGTCCGCTCGTGGAAGACTATCCGCCGCTCGCGGCGGCTCCTCCTGACCAACGCCCTTGAGGCAGTCCTCGTCGGGCTCCTCCTCGGCACCCTCTATGTTGGGGCAGGGCACGACGCCACCCGCGGGGTCGAGAAGCGGCTAGGTTTCTTCGCGTTCACCCTCACCTTCCTCCTCTCGTCCACCACCGAGGCGCTCCCCACCTTCATCACTGAGCGGCCCGCAATTCTCCGGGAGGCATCTGCGGGCATGTATCGCCTCTCCTCGCACCTCGTCGCCAGCACCCTCGTCTTCGTCCCCTGCCTCTTCGTCGTCGCGCTCCTCTACTCCTCCGCTGTCTATTTCCTCGTCGGCCTCTGCCCGTCCTGGACCGCCTTCGCCGGCTTTGTCGCAATTATCTGGGCCCTCGTCCTCGCCGCCAACTCCTTCGTGCTGTTCGTCAGTGCCGTCGCACCCGACTACATCGCCGGGACATCCGTCGTCACGCTGGCGCTCGCCGCCTTCTTCCTCTTCTCGGGGTACTTTATAAGGAAGGAGAGGATGTCGCGCTACTGGCTCTTCATGCATTACTTGAGCCCGTATAGGTACGCGCTCGACGCGATGCTGGAGAACGAGTACGGGTGCGGAGCAAAGCAATGCTTGGCGTGGGAAGCCAGAGGAGCGGCGTGCCGCCTCACCGGCCGGGACGTGCTCGCCGAGAGGGGCTTGACCGCGGGCGCCAAATGGGTCGGGTTTCAGGTTCTCTTGGCTTTCTTCGTACTCTATAGGGTGCTTTACTTGCTCGTGTTAATGAGACGGGTTGCCAGGTGCAAGCGATGAACCGAGCACCATTCCAAATTCTTTTCTTTTTTTCCTTTTTCTCTTTTTTTTTTTTTATGGAAAATTCGCCCAATTTATCTTCGTTTTTTGAGGTTCTAACATCTAAATTTTCCAAAGTAAGATTTTTTATTATTGGTGAGAGGTTCATAATTTGTATGATGATAGAAGATTTGGATGGCCGATAGCTTTGTGCAAATTAATTAGTGAAGCGCGTAAATTTGTAAATAAGAAAGTTTTGAGTGATTCCTAAGATATTCTCACATTTTATATTTTTTCCTTCCTGTATCAAATATTTTAAATAATGAATAAATATTGTATTCCATGTACCAA

Network for GWHGAAEX008586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	53	192	1.50E-27
PF01061.23	ABC2_membrane	313	522	5.90E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.160
SRP064423	SRR2545915	Juvenile tuber	0.840
SRP108465	SRR5643513	five period of Gastrodia elata	12.540
	SRR5643514	five period of Gastrodia elata	15.620
	SRR5643515	five period of Gastrodia elata	3.330
	SRR5643524	five period of Gastrodia elata	10.510
	SRR5643525	five period of Gastrodia elata	3.540
	SRR5643528	five period of Gastrodia elata	2.400
	SRR5643658	five period of Gastrodia elata	2.110
	SRR5643659	five period of Gastrodia elata	6.430
	SRR5643660	five period of Gastrodia elata	4.390
	SRR5643661	five period of Gastrodia elata	4.030
	SRR5643662	five period of Gastrodia elata	5.530
	SRR5643663	five period of Gastrodia elata	9.520
	SRR5643664	five period of Gastrodia elata	6.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.170
SRP279888	Gastro	Gastrodia elata tuber	2.61
	Juven	Juvenile tuber	8.30
	Mother_Gastro	Mother tuber of Gastrodia elata	1.96
	Mother_Juven	Mother tuber of Juvenile	4.68