Detail information of GWHGAAEX008589/evm.TU.scaffold_224.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-22FOG: PPR repeat
nrgi|743837424|ref|XP_010936398.1|3.45E-43PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like, partial [Elaeis guineensis]
Swissprottr|Q9LJR6|PP253_ARATH3.00E-23Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial (Precursor)
trEMBLtr|B4FXZ6|B4FXZ6_MAIZE7.00E-37Uncharacterized protein {ECO:0000313|EMBL:ACF86989.1}
trEMBLtr|B4FXZ6|B4FXZ6_MAIZE6.00E-08Uncharacterized protein {ECO:0000313|EMBL:ACF86989.1}
trEMBLtr|B4FXZ6|B4FXZ6_MAIZE1.00E-06Uncharacterized protein {ECO:0000313|EMBL:ACF86989.1}
TAIRAT3G250601.00E-22Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000231301905302267-
Transcript Sequence

Network for GWHGAAEX008589

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR47690.00063
PF13041.5PPR_2771208.60E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.380
SRR2545915Juvenile tuber3.020
SRP108465SRR5643513five period of Gastrodia elata4.480
SRR5643514five period of Gastrodia elata4.260
SRR5643515five period of Gastrodia elata4.140
SRR5643524five period of Gastrodia elata5.870
SRR5643525five period of Gastrodia elata11.040
SRR5643528five period of Gastrodia elata9.260
SRR5643658five period of Gastrodia elata10.530
SRR5643659five period of Gastrodia elata5.100
SRR5643660five period of Gastrodia elata10.630
SRR5643661five period of Gastrodia elata8.830
SRR5643662five period of Gastrodia elata9.250
SRR5643663five period of Gastrodia elata5.380
SRR5643664five period of Gastrodia elata6.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.640
SRR6049655Rhizomagastrodiae_C368-T10_good_12.920
SRR6049656Rhizomagastrodiae_C368-T07_good_15.330
SRR6049657Rhizomagastrodiae_C368-T07_good_16.590
SRR6049658Rhizomagastrodiae_C368-T04_good_14.400
SRR6049659Rhizomagastrodiae_C368-T04_good_19.030
SRR6049660Rhizomagastrodiae_C368-T01_good_110.400
SRR6049661Rhizomagastrodiae_C368-T04_good_15.460
SRR6049662Rhizomagastrodiae_C368-T01_good_15.040
SRR6049663Rhizomagastrodiae_C368-T01_good_14.040
SRR6049664Rhizomagastrodiae_C368-T10_good_16.700
SRR6049665Rhizomagastrodiae_C368-T10_good_16.700
SRP279888GastroGastrodia elata tuber 8.41
JuvenJuvenile tuber15.74
Mother_GastroMother tuber of Gastrodia elata 5.37
Mother_JuvenMother tuber of Juvenile 8.08