Detail information of GWHGAAEX008590/evm.TU.scaffold_224.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41974.00E-25FOG: PPR repeat
nrgi|672127248|ref|XP_008787087.1|8.02E-47PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Phoenix dactylifera]
Swissprottr|Q9LRV2|PP256_ARATH1.00E-25Pentatricopeptide repeat-containing protein At3g26540
trEMBLtr|C5WWH1|C5WWH1_SORBI3.00E-39Putative uncharacterized protein Sb01g032140 {ECO:0000313|EMBL:EER92105.1}
TAIRAT3G265404.00E-25Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000231302435302968-
Transcript Sequence

Network for GWHGAAEX008590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR8320.002
PF13041.5PPR_21071537.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.940
SRR2545915Juvenile tuber4.010
SRP108465SRR5643513five period of Gastrodia elata4.050
SRR5643514five period of Gastrodia elata3.070
SRR5643515five period of Gastrodia elata1.880
SRR5643524five period of Gastrodia elata2.920
SRR5643525five period of Gastrodia elata2.910
SRR5643528five period of Gastrodia elata2.750
SRR5643658five period of Gastrodia elata3.970
SRR5643659five period of Gastrodia elata2.360
SRR5643660five period of Gastrodia elata5.600
SRR5643661five period of Gastrodia elata2.830
SRR5643662five period of Gastrodia elata2.240
SRR5643663five period of Gastrodia elata3.970
SRR5643664five period of Gastrodia elata3.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.440
SRR6049655Rhizomagastrodiae_C368-T10_good_11.310
SRR6049656Rhizomagastrodiae_C368-T07_good_12.880
SRR6049657Rhizomagastrodiae_C368-T07_good_13.280
SRR6049658Rhizomagastrodiae_C368-T04_good_14.290
SRR6049659Rhizomagastrodiae_C368-T04_good_13.020
SRR6049660Rhizomagastrodiae_C368-T01_good_15.290
SRR6049661Rhizomagastrodiae_C368-T04_good_14.640
SRR6049662Rhizomagastrodiae_C368-T01_good_12.270
SRR6049663Rhizomagastrodiae_C368-T01_good_14.460
SRR6049664Rhizomagastrodiae_C368-T10_good_13.270
SRR6049665Rhizomagastrodiae_C368-T10_good_13.270
SRP279888GastroGastrodia elata tuber 4.34
JuvenJuvenile tuber3.75
Mother_GastroMother tuber of Gastrodia elata 2.39
Mother_JuvenMother tuber of Juvenile 2.26