Detail information of GWHGAAEX008591/evm.TU.scaffold_224.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-14FOG: PPR repeat
nrgi|695046503|ref|XP_009411084.1|1.37E-35PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9C9I3|PP115_ARATH4.00E-15Pentatricopeptide repeat-containing protein At1g71460, chloroplastic (Precursor)
trEMBLtr|W5HR72|W5HR72_WHEAT2.00E-29Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7BL_D8C9A58D1.1} (Fragment)
TAIRAT1G714601.00E-14Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000231303006303861-
Transcript Sequence

Network for GWHGAAEX008591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.490
SRR2545915Juvenile tuber5.270
SRP108465SRR5643513five period of Gastrodia elata4.940
SRR5643514five period of Gastrodia elata4.040
SRR5643515five period of Gastrodia elata3.060
SRR5643524five period of Gastrodia elata2.640
SRR5643525five period of Gastrodia elata3.060
SRR5643528five period of Gastrodia elata8.100
SRR5643658five period of Gastrodia elata4.340
SRR5643659five period of Gastrodia elata5.000
SRR5643660five period of Gastrodia elata3.220
SRR5643661five period of Gastrodia elata4.120
SRR5643662five period of Gastrodia elata3.610
SRR5643663five period of Gastrodia elata4.470
SRR5643664five period of Gastrodia elata4.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.170
SRR6049655Rhizomagastrodiae_C368-T10_good_10.850
SRR6049656Rhizomagastrodiae_C368-T07_good_16.860
SRR6049657Rhizomagastrodiae_C368-T07_good_12.780
SRR6049658Rhizomagastrodiae_C368-T04_good_16.060
SRR6049659Rhizomagastrodiae_C368-T04_good_13.160
SRR6049660Rhizomagastrodiae_C368-T01_good_15.090
SRR6049661Rhizomagastrodiae_C368-T04_good_18.070
SRR6049662Rhizomagastrodiae_C368-T01_good_13.600
SRR6049663Rhizomagastrodiae_C368-T01_good_14.070
SRR6049664Rhizomagastrodiae_C368-T10_good_14.140
SRR6049665Rhizomagastrodiae_C368-T10_good_14.140
SRP279888GastroGastrodia elata tuber 3.81
JuvenJuvenile tuber2.88
Mother_GastroMother tuber of Gastrodia elata 2.17
Mother_JuvenMother tuber of Juvenile 1.90