Gene detail

Detail information of GWHGAAEX008594/evm.TU.scaffold_224.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|440683766\|ref\|YP_007158561.1\|	2.00E-06	WD40 repeat-containing protein [Anabaena cylindrica PCC 7122]
KOG	KOG4155	0	FOG: WD40 repeat
nr	gi\|743770996\|ref\|XP_010915786.1\|	0	PREDICTED: uncharacterized protein LOC105040791 isoform X1 [Elaeis guineensis]
trEMBL	tr\|B9GKC8\|B9GKC8_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE82814.2}
TAIR	AT4G11270	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000231	447703	531334	+

Transcript Sequence
>GWHTAAEX008594 TAGATTTATTTGTTGATCGTTACGCTCCGAAAGAATGAAATGCCCGGCAGTCGCTTGCATTTGGCCCCATTCACCGCCCTCTCACCGTGTCACCGCCGCCACCGTTCTACTCCACCACCCTACCGCCATCTTCACAGGCGGATCCGACGGCTCCATTATCCGTTGGATCTTCTCCAGCCAGAATGTCCGCCCCCTCGCGCTCCTCTGCGGTCATGCCGCTGAGATCGTAAATCTCGTCTCCTGTTTTCCCACCGCTGCTGAGCAAGACTCATCAAACTGCACATCATCTATTCTTCACCCTTCCTCGATACTCAGCGCTTGCGCGGAGGGAGTGCTTTGCGTCTGGAGCTTAGGTACTTTCCGCTGCCGTCGGCGACGGAAGCTCCCTCCATGGGCGGGATCCCCAACCCATTTGACCGCTCTTCCTTCTTCATCGCGCCACGTTTGCATCGCGTGCAGCTCAGGAGAGTATTCTGAGAGCTCCGTGCTCATCGTCGACTCCAGCACGCTGCTCGTGGTGCAGACTATCTTTCATGGGACCTTAGGCATTGGATGCGCGAAATTTATGAATTTCGCTCCTTTGATGGAAGGGTCGGAGAAGGGGAAGCAAGCTATTTTTCTAATGGATGCGTACGGAAAAGCACAGTTCTTCGCTCTGTCCGAAGAGTTTGGTCACGATGGTGAAGGCTCAAGTACGTTCACAGCCGTATGGGGAGATAGTAACACCAACGACGGCGTGCTTGCTGTGGCTGTCGCTCAAGAGTATAATAGCCTGGCTCTCATATACGGATTTCGCTGCGAATTCAGGTCTTTGTTAAATGGCACGGTCGTGGGCGAGATTTCATTACCGAAAGCTAACCTTGACGGTGAAGTATCTTCTGCAATGTTGAATATTACTGGGGGACTGTTCCTTAATCGTTATATCACTGGCAGTGTGAGTGAAGCCCATCTCCATGAAGAGGGTTCTTCATGGAGTTTTTGTTTTGCTTTTTGTTGTAGCGATGGTTCCGCCATGGTATATGCAATTTCTATATTAAACACTGCATTTAACTATCGACTTCTTTATGAAGTTCCCGCGGGGCCGCCGAAAAGTTTGGGGGGTTCATTGTTTCACTTCTGTCAGTTGGACGACTCTCTCGTTCGTCTAGAGTCGGTCTCTTTCTCACTTGGGGGCTTAATTGTATGGAAACCGTTAATTACTATTTGGTCAATGGTTAAGTTTGAATCAACCAAGGAGAGCGGGAATGGTAACTGTTCTTCGAGCATACTTTCAGGAGAAGGCGGCTTTAATGAAATTCAGTCGTTCTCCAGCAAAGGAAAGCTAGATGGAGGGTCGTACAATATCTTCCAGCAAAGAGAGGGCACAGAAAATGCTAATTTGAGTATTCTATCATGTAAAAAGGAAAAGAACGGTTTTAGTTTGGAAGCTCATGTTATATCATCTTCAATGGTGCTTTCAGATGATTTTTATCCTCAATTAGCCATTGTATATGGCTTCTATGGTGGTGAAATTGAAGTGGCTTGGTTGCTGAGTCCAATTCTAAGTGGAAATAATAAGGAAGAAGATTCCACGGCCGAATCTAATCTGTGTGCAACCAAATGTTTCTTTTTAGGACATACTGGTGCTGTGCTTTGCTTAGCTGCGCATCTTATGTCTGCAAGCTCATGCAGCGTTAGCCTTCGCAGGATACTTGTGTCTGGAAGCATGGATTGCACAGTCCGCATATGGGATCTAGATTCTAGAAATCTTTTGTTGGTAATGCATCAGCATATGGCTCCAGTCAAGCAAATCATACTTCCACCTGTCGGGACTGACCGGCCATGGAATAACTGTTTCCTCTCTATTGCTGAAGATGGTTGTGTGGCTCTTGTTTCCCTTGAAACATTACATGTTGAGAGAATGTTCCCTGGACACCCAAGTTATCCATCAGCGTGTGCTTGGGACAGCAAAAGAGGCTACTTGGCATGCCTCTGTAGCAGCTCACTGGCATCATCTGATTCTGTCAGTGTTTTATACCTCTGGGATGTTAAAACAGGTGCTCGAGAAAGGATTATTCGTGGATCAGCTTCTCATTCAATGTTAGATCATTTTTGTAAGGGCATTAGCACGAGCTTCATTAATGGGAGTATTTCTGGAGGCGCTACTTCAGCATCTCCGTTACTTCTTCCAATTAATGATGATCCTGGTTTCTCTCATGCTCGAACAATAAGAACCGATCGGGACACAAATGCTGTGTCTGCTGCAAAAATGGTACATTCTCATAAGTTAAGTACAGATTTTCCTGAGTATGGTTTTTTAACGAATAACAGTATAGTAAAGTTACCTTTCAGTAACATGATCCATGATACAAGTTCTGATTCAGTTGCAAACAGCTCGACAAAGCATGTTACTTTCCAGCATGTTCAACAAAATAAGAAATACCCTATTATATGTTCATGTCCTTTTCCCGGCATAGCTTGCCTTGAATTTGAGCTTTCCTCTTTGGTTTCTCTACGGTCTTTTCAAAGTAGCGATGAACAAACAGTTCCTCAATCTTCTGGCATCACAATGGGGCAAGCTTTGCTAGATGTACCTTTGAAAGATCGTGCTATTGCTCAAGGGGATAGAAGTAATACTATGAAAGTTGCATTGGAAGGATGTCTTCTTCAATTCAGCTTATGCTTTCTTCACTTGTGGGATATCGATCTTGAATTAGACAAGCTATTGAAGGAAGAAATGGAAGTATGCAAACCGTATGGATTTGATGTAGGTACTGGAATACCAGGGGATAGAGGTTCAGTGACTTTATTGTTCCCTGATTTATATTCTAGCTTGGAGCTTTGGAAGTCTTCATCTGAATATTGTGCCATGAGGTCTCTTATAATTGTTTCTCTTGCTCAACGCATGATTAGCTTATGTCAGTTTGCTTCAGATGCAGGCAGTGCGTTGGCAGCATTTTATACTCGGAATTTTGCAGAGAGAACACAAGCCATAAAGCCTCCTTTACTCCAGTTATTGGTGAGTTTTTGGCAAGATCCTAGTGAACATGTGCGCATGGCTGCACGTTCTTTGTTTCATTGTGCAGCACCACGTGCTATTCCACATTCTCTTTGTGGTCAGAAGATGATGAACCCTGGAGCTACTATAACTTCTGTGATTTTTAAGGAAGAAGCATCAGAAAGTTATTGTACTGGCTTAGGAAGCTCTATACAGACTCCTAGCAACACTGATTGTGAAATTGTGTTATGGTTGGAGTCTTTTGAAATTCATGAATGGGTCTCTTGCATTGATGGGACTAGCCAGGATGCCATGGCTTCCCACATCATTGTTGCAGCTGCATTGGTGGTCTGGTACCCGAGCAAAGTGAAAGAAAGTCTTGCCAAGCTTGTTGCTGACAGGTTGGTTAAAGTAGTTATGTCTATGAATGATCGATTTAGTTCCACTGCTGGTGAGCTTCTGGCTGAAGGTATGGATAGCACCTGGAAGTTATGCTTAGGAGCCGAAATACCACGCCTTATTAGCGATATATTTTTTCAGATAGAGTGTTTATCTGGTACACAAGCTAGTACTGGGAAACATAATCCATCCATGATTGCTGGCATTCTGGAGTCTTTGGTAGGAATTCTTCTACCAAGCCTTGCAATGGCTGATATCACTAGTTTTCTAAATGTAATAGAAGACCAAATCTGGTCTACATCATCAGATTCACCTGTTCATCTCATATCATTAAAAACTTTAATCAGGGTAGTACGTGGCTCTCCAAAGCCCTTGGCTTTATATCTTGGCAAGGTGGTGAACTATGTGCTACAGACTATGGACCCTAGCAACTTGGTTTTGCGTAAAACTTGCTTTAATAGCTCATCACTTGCTTTGAAAGAAATTGCACGTGCACTTCCAATGGTTGCTCTTAATGAGACATCAACACGGTTAGCTATTGGAGATGCTATTGGTGACATTCGTAACTTAACCATTCATGTTTATGATTTGGAGAGTGTAACTAAAATAAAGATTTTGGATGCGAATGGTCTTCTTGGTTTTCCAAGTTTACTTGAAGAAACATCAAACGCAGGGATGAGCACAGCCATATCAGCATTAAGCTTTTCACCTGATGGAGAGGGGCTAGTTGCTTTCTCTGAGAACGGCTTGTTGCTAAGATGGTGGTCAGTGGGAACTCACTGGTGGGAGAAGCTAAGCAGAAACTTTGTCCCCGTTCAGTGCACCAAACTGATCTTTGTCCCTCCATGGGAAGGATTTTCTCCCAATTCTTCTAGATCAAGTATAATGGAAAACATTGTTGGGCCGCATAGACTTGAACCTGATTCTGAGGAGAAGTCAAGGGAAGGGGATGAGGCTGAAAGGCTGAGGCTACTGCTTCATAATCTCGATCTCTCTTATCGGATTCGATGGGTTGGCGGTAGAAATGTTTTGCTCAGCCGACACACTCAGGAGTTGGGAACTTTCCCTTTATGAGAAGAAGAGTTGTGCTGCACAGACTAATAAAGAGGGAAATGTGTTTCGATGCAATAAAGTATTGATGAGATTCCGAGTTATTCGAGGTAATCAAGCCTTCTAAAAATCAGATTCAGGAGGAGGAGTGTGC

Network for GWHGAAEX008594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX008594
MKCPAVACIWPHSPPSHRVTAATVLLHHPTAIFTGGSDGSIIRWIFSSQNVRPLALLCGHAAEIVNLVSCFPTAAEQDSSNCTSSILHPSSILSACAEGVLCVWSLGTFRCRRRRKLPPWAGSPTHLTALPSSSRHVCIACSSGEYSESSVLIVDSSTLLVVQTIFHGTLGIGCAKFMNFAPLMEGSEKGKQAIFLMDAYGKAQFFALSEEFGHDGEGSSTFTAVWGDSNTNDGVLAVAVAQEYNSLALIYGFRCEFRSLLNGTVVGEISLPKANLDGEVSSAMLNITGGLFLNRYITGSVSEAHLHEEGSSWSFCFAFCCSDGSAMVYAISILNTAFNYRLLYEVPAGPPKSLGGSLFHFCQLDDSLVRLESVSFSLGGLIVWKPLITIWSMVKFESTKESGNGNCSSSILSGEGGFNEIQSFSSKGKLDGGSYNIFQQREGTENANLSILSCKKEKNGFSLEAHVISSSMVLSDDFYPQLAIVYGFYGGEIEVAWLLSPILSGNNKEEDSTAESNLCATKCFFLGHTGAVLCLAAHLMSASSCSVSLRRILVSGSMDCTVRIWDLDSRNLLLVMHQHMAPVKQIILPPVGTDRPWNNCFLSIAEDGCVALVSLETLHVERMFPGHPSYPSACAWDSKRGYLACLCSSSLASSDSVSVLYLWDVKTGARERIIRGSASHSMLDHFCKGISTSFINGSISGGATSASPLLLPINDDPGFSHARTIRTDRDTNAVSAAKMVHSHKLSTDFPEYGFLTNNSIVKLPFSNMIHDTSSDSVANSSTKHVTFQHVQQNKKYPIICSCPFPGIACLEFELSSLVSLRSFQSSDEQTVPQSSGITMGQALLDVPLKDRAIAQGDRSNTMKVALEGCLLQFSLCFLHLWDIDLELDKLLKEEMEVCKPYGFDVGTGIPGDRGSVTLLFPDLYSSLELWKSSSEYCAMRSLIIVSLAQRMISLCQFASDAGSALAAFYTRNFAERTQAIKPPLLQLLVSFWQDPSEHVRMAARSLFHCAAPRAIPHSLCGQKMMNPGATITSVIFKEEASESYCTGLGSSIQTPSNTDCEIVLWLESFEIHEWVSCIDGTSQDAMASHIIVAAALVVWYPSKVKESLAKLVADRLVKVVMSMNDRFSSTAGELLAEGMDSTWKLCLGAEIPRLISDIFFQIECLSGTQASTGKHNPSMIAGILESLVGILLPSLAMADITSFLNVIEDQIWSTSSDSPVHLISLKTLIRVVRGSPKPLALYLGKVVNYVLQTMDPSNLVLRKTCFNSSSLALKEIARALPMVALNETSTRLAIGDAIGDIRNLTIHVYDLESVTKIKILDANGLLGFPSLLEETSNAGMSTAISALSFSPDGEGLVAFSENGLLLRWWSVGTHWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMENIVGPHRLEPDSEEKSREGDEAERLRLLLHNLDLSYRIRWVGGRNVLLSRHTQELGTFPL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.940
SRP064423	SRR2545915	Juvenile tuber	5.170
SRP108465	SRR5643513	five period of Gastrodia elata	4.610
	SRR5643514	five period of Gastrodia elata	5.190
	SRR5643515	five period of Gastrodia elata	4.900
	SRR5643524	five period of Gastrodia elata	5.660
	SRR5643525	five period of Gastrodia elata	4.360
	SRR5643528	five period of Gastrodia elata	3.480
	SRR5643658	five period of Gastrodia elata	3.560
	SRR5643659	five period of Gastrodia elata	4.730
	SRR5643660	five period of Gastrodia elata	4.240
	SRR5643661	five period of Gastrodia elata	4.770
	SRR5643662	five period of Gastrodia elata	3.590
	SRR5643663	five period of Gastrodia elata	4.000
	SRR5643664	five period of Gastrodia elata	3.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.530
SRP279888	Gastro	Gastrodia elata tuber	4.25
	Juven	Juvenile tuber	6.17
	Mother_Gastro	Mother tuber of Gastrodia elata	4.67
	Mother_Juven	Mother tuber of Juvenile	6.66