Gene detail

Detail information of GWHGAAEX008599/evm.TU.scaffold_224.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|53804450\|ref\|YP_113939.1\|	2.00E-137	ATP-dependent helicase HrpA [Methylococcus capsulatus str. Bath]
KOG	KOG0922	0	DEAH-box RNA helicase
nr	gi\|695068199\|ref\|XP_009381035.1\|	0	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|A0A067KY08\|A0A067KY08_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP36699.1}
TAIR	AT3G26560	0	ATP-dependent RNA helicase, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000231	791410	798817	+

Transcript Sequence
>GWHTAAEX008599 TAGAGTTTTTTTTTTGATAATTTTTCTTATCTACAGAAACAACTCAGTCTGCCCCAAACTCGTCCCGTCCAATGTTCTAACAAAACCCTAATTGTGTTTCCTTATGTCTGCAGCGGTGTCTGGCGCCGAGGACGGCCTCAAGAAGCTCGAGTACCTTTCCCTCGTTTCCAAGGTTTGTACAGAGCTCGAGAATCATGTCGGCTGCGGAGATAAAGTTCTTGCGGAATTCATCACAGAGCTAGGCCGGAACGCCGATTCCGTCGAGGAATTTGACGCCAAGCTCAAGGAGAATGGAGCCGAAATGCCCGACTACTTCGTGCGCACCCTTCTGACAATCATACACGCCATTCTACCCCCTGATTCCAAATCCAAATCCAAATCCAGACCCTCTTCCGATCCTTCTTCCGACAAGAAAGATGCAGCATTTCCAGGGCTTTCCCGCGCCGACGACCGAGAGCGTATCAAGGAGCTTGAGCGTGAAATCGAGAAGGATGCTCGGGACAAGGCGGGCGAGGACAGTAAAAGGTATCACGACCGCGATAGGGATCGCGACAGAAATCGCGATCGCCATCGCGATCATGATCAGGACACGGATCGGAGGGGCCATCGCGATAACTGGTACGACCGAGGCAGAGATAGAGGTCGGAATCATAGAAGAGATGGCTACGGCAGCCATAGTGCGTATTATAGTGAAGAAGACCAAGATGATGGCGGCCGGCATGAGAAAACCAGTTCTAGTGGAAGGAATTTGGATGAGCCGGAACTTTATCAGGTTTACAAGGGCAGGGTTTTGCGTCTGATGGATAATGGGTGCTTTGTCGAACTTTCTGATTTCAGAGGAAGGGAGGGGCTTGTTCATGTTTCACAGATTGCAAGTAGAAGAGTCGCCAATGCGAAGGAAGAGGTGAAGCGCGGTCAGGATGTGTATGTGAAGGTGATCTCCGTTTCTGGAAAAAAGCTCAGTTTATCTATGAGAGATGTGGATCAAAATAATGGCAAGGATCTTCTTCCGTTAAGAAAGAAGGCAGAGGATGAAGCTTTGAGGACCAACCCCTCCAGCGGGAACAATGGCCCTGTAGCAAGGAAAGGTCTTTCGGGAATTACCATTGTTGAGGATGATAATAATTCTTCATCCAGAAGGCCTTTGAAGAGGATGAGCTCGCCTGAGAGGTGGGAAGCCAAGCAGCTGATTGCGTCAGGTGTGTTGGATGTTCGCGATTATCCGATGTTTGATGACGAGGGGGACGGCCTCCTATATCAGGAAGAAGGCGCTGAAGAAGAACTTGAGATTGAACTCAATGAAGATGAACCTGCTTTTTTGCATGGTCAGAGTCGGTTTTCTATAGACATGTCTCCTGTAAAGATCTTCAAGAATCCAGAGGGTTCCTTAAGCAGAGCTGCTGCTCTCCAGTCTGCTCTTATCAAGGAAAGGAGAGAAGTCCGGGAGCAGCACCAGAGAACTATGCTTGATTCCATCCCTAAGGATCTTAATCGACCGTGGGAAGATCCGATGCCTGAGACGGGGGAGAGGCACCTTGCACAGGAGCTGCGAGGTGTGGGGTTGTCTGCTTATGACATGCCTGAGTGGAAGAAAAATGCATACGGTAAAGCTTTGACCTTTGGCCAGAGATCAAAGCTTTCAATACAGGAGCAGAGGCAGAGTCTGCCGATCTACAAATTGAAGAAAGAGTTAGTTCAGGCAGTGCATGACAACCAGGTATTGGTTGTCATTGGCGAGACTGGATCTGGGAAGACCACACAAGTGACTCAGTACTTAGCCGAGGCAGGATACACCACAAAGGGGAAAATTGGGTGCACGCAGCCCCGGAGGGTGGCAGCTATGTCAGTTGCAAAAAGGGTGGCAGAGGAGTTTGGCTGTCGTTTAGGTGAGGAAGTCGGTTATGCTATTCGATTTGAGGATTGCACGGGGCCAGATACTGTGATAAAATATATGACAGATGGCATGCTTTTGAAGGAGATATTGGTTGATGAGAGTCTTTCACAGTATTCTGTGATCATGCTCGATGAAGCTCATGAGAGGACAATCCACACAGACGTGCTTTTTGGTTTGCTAAAGCTGCTTGTGAAACGGAGGCCTGAGCTTCGCCTGATTGTCACTTCTGCAACACTAGATGCTGAGAAGTTCTCTGGATATTTTTTCAATTGCAATATTTTCACGATTCCTGGCAGAACGTTTCCTGTTGAGATTCTCTACACAAAACAGCCTGAAAGTGATTATCTAGACGCAGCTCTGATCACAGTTCTGCAGATTCACTTGACAGAACCGGAAGGAGATGTTCTTCTTTTCTTGACTGGTCAAGAAGAGATCGATCATGCTTGTCAATCTCTTTATGAGAGAATGAAAGGCCTGGATAAGAATGTGCCAGAACTGATTATATTACCTGTTTATAGTGCTCTCCCTAGTGAAATGCAGTCTAGGATTTTTGATCCTGCTCCTGTTGGTAAGAGGAAAGTTGTTGTAGCTACTAATATTGCTGAAGCTTCTTTGACAATTGATGGAATATATTATGTCATTGATCCTGGATTTGCCAAGCAAAATGTCTATAACCCTAAACAAGGGCTTGACTCGTTAGTCATCACTCCAATATCTCAAGCATCAGCTAAGCAAAGAGCAGGACGTGCTGGCCGTACTGGCCCAGGAAAGTGTTATCGTCTCTATACAGAAAGTGCTTATCGCAATGAAATGTCACCCACATCAATTCCTGAAATTCAGAGGATTAATCTTGGGACAACGACATTGAATCTGAAGGCAATGGGGATAAATGATCTCTTATCTTTTGATTTTATGGATCCTCCTTCACCTCAGGCCCTTATATCTGCCATGGAGCAGCTGTACAGTCTGGGAGCTTTAGATGAAGAGGGTCTTTTGACTAAATTAGGGAGAAAAATGGCAGAGTTTCCATTGGATCCACCATTGTCGAAGATGCTACTTGCTAGTGTGGACCTTGGCTGCAGTGATGAAATATTGACCATTATCGCTATGATTCAGACAGGGAATATTTTCTATAGACCTAGGGAGAAGCAAGCCCAAGCGGATCAAAAGCGTGCAAAGTTTTTCCAGCCAGAAGGAGACCACTTAACTTTGCTTGCTGTTTATGAAGCATGGAAAGCTAAGAATTTTTCTGGCCCTTGGTGTTTTGAGAACTTTGTACAGTCCCGTTCCCTTAGGAGGGCTCAAGATGTCAGAAAGCAACTTCTTACTATAATGGATAGATATAAACTGGATGTTGTGAGCGCAGGGAAGAACTTCACAAAGATAAGGAAGGCGATAACAGCGGGCTTCTTTTTCCACGCAGCAAGAAAGGACCCTCAGGAGGGGTACAGGACAGTGGTGGAGAACCAGGCTGTGTACATCCATCCGAGCAGCGCACTCTTTCAGAGGCAGCCGGATTGGGTCATCTATCACGAGCTGGTGATGACAACTAAGGAGTACATGCGGGAGGTCACTGTTGTCGATCCCAAGTGGCTGGTTGAGCTTGCCCCCAGATTCTACAAGTCCTCCGATCCCACCAAGATGAGCAAGCGCAAGCGTCAGGAGCGCATTGAGCCTCTTTATGACCGTTACCATGAGCCTAATTCCTGGCGTCTCAGCAAACGCCGCGCCTGATCCCCTTCAATCAGCAGCCTCTTATTTTTCATCCGTTTCTCTTAAAGATATTGTCATGTGTAGCACCCAAATCTTTAAATATTACATATTCAGCGCCCGAATTTAAATTTCTACAAAAAAAGTTGCAATTCATCATCTCTAGATTGAATGGACACCTCATATCCATTTGTATTTTAAAGAATCTTAATGGTGAAAAATGAATGTGTTTTCTATAAATATTAAAAATCGAGTGCTGATTATATAATATTTAAAGAGTTTGATGCTATATATTTTTTAACAAATACTGTGAGTTTATAAAATATGGGTTTTTTCTCTTATAATGTTCTTCTGGAAGGAGTGCTTTGTCAACTCCTTGCGCAACTAAATTATATAGAGGTGTGTGATGCTTAATTTATCTAAGCATTCTCTGCGCTTCGGCTTTCCCGACCCTACAGCGTGGCTTCAATTTCTGCAGCTTCCCGTCGCTGGTGCCGTCGTGCAAAATCCGTAGAGGCCTTGAAAGATCACCTCTTCCCGCTACCTGCCGCAATGGAGAAATATCAATCTCATGCCCCTGTGTTGTTTTCCTTGATGATCTTAAGGTGGAGCGGTCACTGTTGGTGTGCAATTGGGGTGACTAACTTGCTGCCATTGAGCTGAAATGAACCAGATCCTGAAAATGAATTTGAAGCAGATTCTGAAACAGATTTCAAGTGAGAACTCTTTTGTAATTAAAACTTATTTGATTTAATACAGTTATTTGTATGCTTATTTTTTTATGGCAATGTAGCTTTTCATTACTTATGTTGAATCGGAAGCATTTATCTATTGATTGTTTTAGTGGATTGATCAGTTTTTGTGGATAAATCAGTTTAAGCAACCATGGTTGCATTTTTGAGAACTGCTGCTACACAATGG

Network for GWHGAAEX008599

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.22	S1	221	290	5.30E-12
PF00270.28	DEAD	528	677	6.40E-07
PF00271.30	Helicase_C	719	851	9.30E-13
PF04408.22	HA2	913	1001	1.80E-25
PF07717.15	OB_NTP_bind	1059	1134	3.20E-24

Protein Sequence

>GWHPAAEX008599
MSAAVSGAEDGLKKLEYLSLVSKVCTELENHVGCGDKVLAEFITELGRNADSVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPDSKSKSKSRPSSDPSSDKKDAAFPGLSRADDRERIKELEREIEKDARDKAGEDSKRYHDRDRDRDRNRDRHRDHDQDTDRRGHRDNWYDRGRDRGRNHRRDGYGSHSAYYSEEDQDDGGRHEKTSSSGRNLDEPELYQVYKGRVLRLMDNGCFVELSDFRGREGLVHVSQIASRRVANAKEEVKRGQDVYVKVISVSGKKLSLSMRDVDQNNGKDLLPLRKKAEDEALRTNPSSGNNGPVARKGLSGITIVEDDNNSSSRRPLKRMSSPERWEAKQLIASGVLDVRDYPMFDDEGDGLLYQEEGAEEELEIELNEDEPAFLHGQSRFSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQHQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKNAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLKEILVDESLSQYSVIMLDEAHERTIHTDVLFGLLKLLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDHACQSLYERMKGLDKNVPELIILPVYSALPSEMQSRIFDPAPVGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGTTTLNLKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTVVENQAVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFYKSSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	Molecular Function	helicase activity
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.340
SRP064423	SRR2545915	Juvenile tuber	30.770
SRP108465	SRR5643513	five period of Gastrodia elata	28.800
	SRR5643514	five period of Gastrodia elata	26.340
	SRR5643515	five period of Gastrodia elata	23.030
	SRR5643524	five period of Gastrodia elata	26.040
	SRR5643525	five period of Gastrodia elata	26.200
	SRR5643528	five period of Gastrodia elata	19.750
	SRR5643658	five period of Gastrodia elata	27.010
	SRR5643659	five period of Gastrodia elata	35.750
	SRR5643660	five period of Gastrodia elata	44.610
	SRR5643661	five period of Gastrodia elata	34.170
	SRR5643662	five period of Gastrodia elata	34.570
	SRR5643663	five period of Gastrodia elata	32.070
	SRR5643664	five period of Gastrodia elata	35.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.750
SRP279888	Gastro	Gastrodia elata tuber	39.62
	Juven	Juvenile tuber	61.99
	Mother_Gastro	Mother tuber of Gastrodia elata	37.44
	Mother_Juven	Mother tuber of Juvenile	57.47