Detail information of GWHGAAEX008602/evm.TU.scaffold_224.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|288931551|ref|YP_003435611.1|2.00E-136TIP49 domain protein [Ferroglobus placidus DSM 10642]
KOGKOG26800DNA helicase TIP49, TBP-interacting protein
nrgi|514730860|ref|XP_004957042.1|0PREDICTED: ruvB-like 2-like [Setaria italica]
Swissprottr|Q9FMR9|RIN1_ARATH1.00E-116RuvB-like protein 1
trEMBLtr|K3ZSX6|K3ZSX6_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si029706m}
TAIRAT5G676300P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000231943917949616-
Transcript Sequence

Network for GWHGAAEX008602

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06068.12TIP49194116.50E-177
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0003678Molecular FunctionDNA helicase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.210
SRR2545915Juvenile tuber15.280
SRP108465SRR5643513five period of Gastrodia elata59.860
SRR5643514five period of Gastrodia elata52.480
SRR5643515five period of Gastrodia elata48.730
SRR5643524five period of Gastrodia elata53.890
SRR5643525five period of Gastrodia elata122.040
SRR5643528five period of Gastrodia elata87.200
SRR5643658five period of Gastrodia elata103.820
SRR5643659five period of Gastrodia elata78.110
SRR5643660five period of Gastrodia elata91.680
SRR5643661five period of Gastrodia elata85.210
SRR5643662five period of Gastrodia elata77.450
SRR5643663five period of Gastrodia elata68.690
SRR5643664five period of Gastrodia elata66.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.290
SRR6049655Rhizomagastrodiae_C368-T10_good_135.040
SRR6049656Rhizomagastrodiae_C368-T07_good_144.060
SRR6049657Rhizomagastrodiae_C368-T07_good_133.930
SRR6049658Rhizomagastrodiae_C368-T04_good_130.260
SRR6049659Rhizomagastrodiae_C368-T04_good_125.240
SRR6049660Rhizomagastrodiae_C368-T01_good_140.610
SRR6049661Rhizomagastrodiae_C368-T04_good_132.220
SRR6049662Rhizomagastrodiae_C368-T01_good_150.910
SRR6049663Rhizomagastrodiae_C368-T01_good_149.790
SRR6049664Rhizomagastrodiae_C368-T10_good_152.760
SRR6049665Rhizomagastrodiae_C368-T10_good_152.760
SRP279888GastroGastrodia elata tuber 57.52
JuvenJuvenile tuber75.67
Mother_GastroMother tuber of Gastrodia elata 46.75
Mother_JuvenMother tuber of Juvenile 43.97