Detail information of GWHGAAEX008605/evm.TU.scaffold_225.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672183142|ref|XP_008811840.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Phoenix dactylifera] |
| Swissprot | tr|O81767|PP348_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g33990 |
| trEMBL | tr|W9S113|W9S113_9ROSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EXC20588.1} |
| TAIR | AT4G33990 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000220 | 271524 | 274265 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008605
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 64 | 90 | 0.0022 |
| PF01535.19 | PPR | 136 | 158 | 7.00E-05 |
| PF01535.19 | PPR | 165 | 192 | 1.00E-05 |
| PF01535.19 | PPR | 237 | 263 | 0.0002 |
| PF01535.19 | PPR | 265 | 295 | 2.00E-05 |
| PF01535.19 | PPR | 339 | 364 | 0.11 |
| PF01535.19 | PPR | 367 | 395 | 8.70E-07 |
| PF01535.19 | PPR | 441 | 466 | 0.0076 |
| PF13041.5 | PPR_2 | 471 | 514 | 4.40E-11 |
| PF14432.5 | DYW_deaminase | 640 | 764 | 1.70E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.010 |
| SRR2545915 | Juvenile tuber | 1.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.450 |
| SRR5643514 | five period of Gastrodia elata | 2.300 | |
| SRR5643515 | five period of Gastrodia elata | 1.920 | |
| SRR5643524 | five period of Gastrodia elata | 2.290 | |
| SRR5643525 | five period of Gastrodia elata | 0.930 | |
| SRR5643528 | five period of Gastrodia elata | 0.810 | |
| SRR5643658 | five period of Gastrodia elata | 0.340 | |
| SRR5643659 | five period of Gastrodia elata | 3.260 | |
| SRR5643660 | five period of Gastrodia elata | 3.290 | |
| SRR5643661 | five period of Gastrodia elata | 3.380 | |
| SRR5643662 | five period of Gastrodia elata | 3.630 | |
| SRR5643663 | five period of Gastrodia elata | 3.540 | |
| SRR5643664 | five period of Gastrodia elata | 2.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.19 |
| Juven | Juvenile tuber | 1.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.05 | |
| Mother_Juven | Mother tuber of Juvenile | 1.04 |