Detail information of GWHGAAEX008609/evm.TU.scaffold_226.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-18 | FOG: PPR repeat |
| nr | gi|695039598|ref|XP_009407342.1| | 1.08E-42 | PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SXD1|PPR91_ARATH | 1.00E-18 | Pentatricopeptide repeat-containing protein At1g62670, mitochondrial (Precursor) |
| trEMBL | tr|I1IUA5|I1IUA5_BRADI | 3.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G42330.1} |
| trEMBL | tr|I1IUA5|I1IUA5_BRADI | 1.00E-11 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G42330.1} |
| trEMBL | tr|I1IUA5|I1IUA5_BRADI | 3.00E-08 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G42330.1} |
| TAIR | AT1G62670 | 5.00E-18 | rna processing factor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000226 | 121295 | 122632 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008609
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 90 | 113 | 2.00E-06 |
| PF13041.5 | PPR_2 | 164 | 213 | 9.50E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.380 |
| SRR5643514 | five period of Gastrodia elata | 0.430 | |
| SRR5643515 | five period of Gastrodia elata | 0.440 | |
| SRR5643524 | five period of Gastrodia elata | 0.710 | |
| SRR5643525 | five period of Gastrodia elata | 0.570 | |
| SRR5643528 | five period of Gastrodia elata | 1.350 | |
| SRR5643658 | five period of Gastrodia elata | 0.510 | |
| SRR5643659 | five period of Gastrodia elata | 0.700 | |
| SRR5643660 | five period of Gastrodia elata | 0.850 | |
| SRR5643661 | five period of Gastrodia elata | 0.860 | |
| SRR5643662 | five period of Gastrodia elata | 0.680 | |
| SRR5643663 | five period of Gastrodia elata | 0.450 | |
| SRR5643664 | five period of Gastrodia elata | 1.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.41 |
| Juven | Juvenile tuber | 0.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.30 | |
| Mother_Juven | Mother tuber of Juvenile | 0.27 |