Detail information of GWHGAAEX008611/evm.TU.scaffold_226.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08004.00E-36FOG: Predicted E3 ubiquitin ligase
nrgi|743757548|ref|XP_010922495.1|1.63E-51PREDICTED: pre-mRNA-splicing ATP-dependent RNA helicase prp28-like [Elaeis guineensis]
Swissprottr|O49500|MBR2_ARATH2.00E-29E3 ubiquitin-protein ligase MBR2
trEMBLtr|K3XJI2|K3XJI2_SETIT2.00E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:Si002055m}
TAIRAT1G737604.00E-36RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000226159789174925-
Transcript Sequence

Network for GWHGAAEX008611

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22232662.10E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.600
SRR2545915Juvenile tuber9.570
SRP108465SRR5643513five period of Gastrodia elata7.470
SRR5643514five period of Gastrodia elata6.600
SRR5643515five period of Gastrodia elata11.450
SRR5643524five period of Gastrodia elata7.820
SRR5643525five period of Gastrodia elata15.820
SRR5643528five period of Gastrodia elata29.040
SRR5643658five period of Gastrodia elata15.450
SRR5643659five period of Gastrodia elata13.820
SRR5643660five period of Gastrodia elata13.250
SRR5643661five period of Gastrodia elata14.210
SRR5643662five period of Gastrodia elata18.220
SRR5643663five period of Gastrodia elata13.630
SRR5643664five period of Gastrodia elata18.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.780
SRR6049655Rhizomagastrodiae_C368-T10_good_18.140
SRR6049656Rhizomagastrodiae_C368-T07_good_19.220
SRR6049657Rhizomagastrodiae_C368-T07_good_18.910
SRR6049658Rhizomagastrodiae_C368-T04_good_19.810
SRR6049659Rhizomagastrodiae_C368-T04_good_19.830
SRR6049660Rhizomagastrodiae_C368-T01_good_113.110
SRR6049661Rhizomagastrodiae_C368-T04_good_18.080
SRR6049662Rhizomagastrodiae_C368-T01_good_17.110
SRR6049663Rhizomagastrodiae_C368-T01_good_111.130
SRR6049664Rhizomagastrodiae_C368-T10_good_16.680
SRR6049665Rhizomagastrodiae_C368-T10_good_16.680
SRP279888GastroGastrodia elata tuber 13.20
JuvenJuvenile tuber5.05
Mother_GastroMother tuber of Gastrodia elata 25.34
Mother_JuvenMother tuber of Juvenile 15.56