Detail information of GWHGAAEX008614/evm.TU.scaffold_226.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18978185|ref|NP_579542.1| | 3.00E-28 | 50S ribosomal protein L24 [Pyrococcus furiosus DSM 3638] |
| KOG | KOG3401 | 2.00E-78 | 60S ribosomal protein L26 |
| nr | gi|672118195|ref|XP_008782300.1| | 3.75E-92 | PREDICTED: 60S ribosomal protein L26-1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FJX2|RL262_ARATH | 6.00E-79 | 60S ribosomal protein L26-2 |
| trEMBL | tr|A5AD03|A5AD03_VITVI | 2.00E-91 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN73296.1} |
| TAIR | AT5G67510 | 2.00E-78 | Translation protein SH3-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000226 | 208160 | 208976 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008614
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16906.4 | Ribosomal_L26 | 8 | 121 | 1.40E-39 |
| PF00467.28 | KOW | 51 | 82 | 8.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02898 | RP-L26e, RPL26 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 121.710 |
| SRR2545915 | Juvenile tuber | 167.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 406.080 |
| SRR5643514 | five period of Gastrodia elata | 431.770 | |
| SRR5643515 | five period of Gastrodia elata | 377.480 | |
| SRR5643524 | five period of Gastrodia elata | 396.210 | |
| SRR5643525 | five period of Gastrodia elata | 182.240 | |
| SRR5643528 | five period of Gastrodia elata | 246.520 | |
| SRR5643658 | five period of Gastrodia elata | 145.430 | |
| SRR5643659 | five period of Gastrodia elata | 461.590 | |
| SRR5643660 | five period of Gastrodia elata | 423.610 | |
| SRR5643661 | five period of Gastrodia elata | 457.930 | |
| SRR5643662 | five period of Gastrodia elata | 360.930 | |
| SRR5643663 | five period of Gastrodia elata | 343.540 | |
| SRR5643664 | five period of Gastrodia elata | 313.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 369.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 339.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 475.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 347.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 284.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 236.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 368.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 359.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 588.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 492.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 634.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 634.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 459.33 |
| Juven | Juvenile tuber | 352.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 160.83 | |
| Mother_Juven | Mother tuber of Juvenile | 208.72 |