Gene detail

Detail information of GWHGAAEX008616/evm.TU.scaffold_226.16

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743758176\|ref\|XP_010925453.1\|	PREDICTED: BURP domain-containing protein 12-like [Elaeis guineensis]
Swissprot	tr\|P92990\|JP650_ARATH	Probable polygalacturonase non-catalytic subunit JP650 (Precursor)
trEMBL	tr\|A0A0A0LK44\|A0A0A0LK44_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN62285.1}
TAIR	AT1G70370	polygalacturonase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000226	356566	359890	+

Transcript Sequence
>GWHTAAEX008616 ATTCTTTAAAACCCACCCCACCCAAATTCCGTCACCACCATCCATGGACCAAAGCAAGTACCAACTCAGCTCAATGTTCCTCTTCCTCCATATACTCTTCATCATCCTCTTCTCTCTCTCCCTCTCAGCGGCCGTATACTCATCGGCGCCTATAAAAGCCTCCCTAAACCCATTCACAGAGAAGGCTGCAGTTCTCCGTTACTGGAACAGAAAAATCCGGAACCCTTCTACCCATCCAGACTTCTTCGTCTCCAAGCTCAGCCCGCTGTCCGTCTCCAACTCCGCCAAGTTTTCCTCACTGGTAGCTTCGGATCCCTTCAAACTCTCCTCAGATCTATCTTCCTTCTGCTCGGCCGCAGCCCTCCTCTGCTCTACCCAGCTGACCGCTCCATCCCTCGCCTCCCATCCGCGCGACTCCTCCTTCTCCAAATACGAGAACACTAACTTCACCAACTACGCTTCCGAGGCCGGCGGAGGCCTCTCTTCCTTTAAGAAGTACTTCGGTAACGAGGTCCCCTTGAGCCAGTTCCGCCGCTACGGCCACAGCAGCGGCGGCCATGACGATTCCTTCATTGTCTACGGACCCAGAAACAACGATGCCGGGTCCAATTTCACCTCCTACGGAACCAGCTCCGCTGGCGGAAACGATGATTTCAAGTCCTACGCCAATTCCTCTAACATCCCCATTCTAGGCTTCAGCAATTATGCCGCAGAAAGCACCGGAAGGATCTCCAGTTTCAAGCACTACTCCGACGACGCCAACGTCGGCCAGCAGCTCTTCTCCAACTACGCCAAGCGCGGGAGCGGCGCAACCTCAGACTTCACCACTTACGCTCACAAATTTTCTAACATCATCGAAAGCGGTTTCTCCCATTACGGCGACAATGGCGATGGGAACAAGAATACTTTCACGACTTATTCCGAACATGCCAATATCCCCAACAACCATTTCGATTCTTACGGAACGAAAACCCTAGCCGGAATCGAGACTTTCACGACCTACCGCCATCAATCCAACATAGGCGACGATTCCTTTGCAACCTACCACAAGGACGGAAATTACGGCACCGTTACATTCACAAATTACGGAAACGACAGCTCGGGAGCCGATTCGTTCAAGAGCTACGGCGAGAATTCCACCAACGGGCACGTCTCCTTCGTCTCCTACTTCGAAGACAACACAACATTCAAAGCGTATGCGAAAGAAGGGGTCGATTTCAAATCCTACCACAATTCCTCCTCCGATTCCGCCCAGATCCAAGCAGAGTCAAGGACGAGCGTGTGGGTGGAGCCTGGGAAGTTCTTCAGGGAATGGAGCTTGAAAGAGGGGACGGTGATGCCGATGCCGAGGATTCAAGATCAGTTGCCTCTGCGGAAATTTCTTCCGCGATCGATCGCAGGGAAAATCCCTATTTCTGTTGCCGCCGTGACGGAAATCTTCAAGCTCTCTCCTGGAAGCGACATGGCGAAGGCAGTCGCGTCGACGGTGGCGGATTGCGATCGAGCGGCGAGCCTAGGGGAGACGAAGAAGTGCGCCTCCTCTGCCGAGGATATGATCGATTTTGCCGTCTCCGTGCTCGGCGACGATGTCGAAGTCAGATCGACGGCCAACACGGAGGGCTCCCACGGAGATATACTCATCGGCAAGGTGAAGGGGATGAACAGAGGTAAGGTTACCGAATCGGTGAGCTGTCACCAGGGCCTGTTTCCCTTCATGCTGTACTACTGCCATTCCGTTCCGCGCGTGCGCGTTTATGAAGCAGAAATCCTGGCCGTTGATAGCAAGGAGAAGATCAATCATGGGATCGCCATCTGTCACGTTGACACGTCGGATTGGAGCGCCACGCACGGTGCGTTCGTGGCGCTGGGGCCGGGGCCGGGGAAGATCGAGGTGTGCCATTGGATCTTTGAAGGGGATATGATGTGGACGGTTAGAGATCGGGTCTGAATGAAAAAGGGGCACGTGACCGACCCTCCGATATTTCTTTCTTTTTCTGAATCGTTTCTCGTGTCCACAGATGCTAGCCATCCAAAGAGAAAGGTGTCAAAACTTTTGTATCACTCACTCCTTCAATGCCTGAGATCCCTACCTGCCAGGGGAAATAGATCAAATATTTTTATCTGCAGAAGAACTCGCTAATGGAACACAACTTCTTAGTTGATAATAATCACCTGTTGATCAAAACAAACCATAAACTTTGATTCCAAAAAACTCAATCTTTGGCCCCTAAGAGTAAACCTTTGATTTTCAATTCACAAGTAATGGGCGATCAACACAAATTGCAATTTATAGATTTGAAAATAAATATTTTGTGTTTTTGTGAATGATGAGATGCTGCTACGGTGTCTTTCCCGCAGTCAAAAGTAGAGCCTTTCTTTTCTTTGAACAATTAGCTTTTTTCATTTTCTTCTGCCTCCCACCCGAGTTATATTTTTCTCCATTTTTGTGCTTTTTCCTGCTTTCTTAACTGCGCACAAAAGCTTCTTTTTCCTGCTCTCTGTATCATTCACCCTTGCAATTGATGATCCGCAGCCGCTTCGTTTTTACTTTTTTATTGCTAACAAATACATATTTTGCTACAACTTTCAACCTAAAAGTTGTAATGCTACGATTAAGATGTTAGGATTATTACAATGAATTTGAGTTGAGGTTCTCAAAGTAAAACATATAAATAAAAGTACAGAATTACAACACAAGTCACAAATATCTAAACTCAAGAATTTACATAAAAAACTTAAAATTTAGGAAAAATCACAGAACCATATTATCACAAGAAATTCATTGAAGAATATAATATTATAGAGTATAAATTAAGACTTGAACTTTTGGAGGAACAAAAAGATGATAAACTCCTTTTAGAAATACACTCAAGCCCTATCATTCTTCAACACACTCACAAACTCTCTCACAAATTTTTTCCTAAAATGGTCTCTGTCAAGAGGCACTCACACCTATTCTTACAACTTAGAGCTTCCAGCAGACTTTAAAACAAGCTCAAGATCGCCCGAATCTGTCCACAGAGGATCACCGGATGCCTGTTTTCGCGTTTGATCCATCACGGGCGCAGACTCTGCCTGGCAGGCGCCTGGCCTTTGGGTCCAAGAGCTGAAGGGCGAGCCCAGGCATGCCGAAGAGCTCGAATTGCTCCCGACTTATCTCGGAAACTCACTCTCTGGACACTTTTTTGAAGATTCAATTAATCTCCACATCTTAACATAAGACTATAATTTAAAATGAGTTAATTTTTATTTTTCTTACTTTATGTAATTCTTATAATTTTGAAATAAAATCCTACGTATAATTTATAGAATATAACATTTCTTA

Network for GWHGAAEX008616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03181.14	BURP	420	629	2.90E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.040
SRP064423	SRR2545915	Juvenile tuber	48.060
SRP108465	SRR5643513	five period of Gastrodia elata	100.760
	SRR5643514	five period of Gastrodia elata	101.060
	SRR5643515	five period of Gastrodia elata	75.480
	SRR5643524	five period of Gastrodia elata	77.850
	SRR5643525	five period of Gastrodia elata	78.600
	SRR5643528	five period of Gastrodia elata	45.040
	SRR5643658	five period of Gastrodia elata	178.130
	SRR5643659	five period of Gastrodia elata	155.440
	SRR5643660	five period of Gastrodia elata	108.910
	SRR5643661	five period of Gastrodia elata	106.270
	SRR5643662	five period of Gastrodia elata	114.950
	SRR5643663	five period of Gastrodia elata	165.570
	SRR5643664	five period of Gastrodia elata	60.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	83.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	148.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	101.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	85.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	119.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	119.600
SRP279888	Gastro	Gastrodia elata tuber	101.83
	Juven	Juvenile tuber	135.92
	Mother_Gastro	Mother tuber of Gastrodia elata	21.19
	Mother_Juven	Mother tuber of Juvenile	20.61