Gene detail

Detail information of GWHGAAEX008619/evm.TU.scaffold_226.19

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|470126065\|ref\|XP_004299014.1\|	6.62E-98	PREDICTED: uncharacterized protein LOC101298222 [Fragaria vesca subsp. vesca]
trEMBL	tr\|F6HUX3\|F6HUX3_VITVI	1.00E-95	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58491.1}
TAIR	AT3G01560	7.00E-61	Protein of unknown function (DUF1421)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000226	379667	397002	-

Transcript Sequence
>GWHTAAEX008619 AAAAAAAAAAAAAATTCTTAGCTATTTGGTGCGATTTTTTTCTTCTCTTAAGCAAATGATCAATGAAAGGATTTGCAATAAATCATTAATGGAGCCATGAAATGATTCATACATATTATTCCGGAAGCAGCACTCTAGCTTTCGGAAATTCTTCACATCGCTTCTACTTCTTCCGAATCTGTAAACCGTAGAAACTTGTCGTTGATTTCGTTTCGGATCCCACCGATGAACTCGTCTCCGTTCATGGACAAACAGATCATGGGGCTTTCAGGATCGCCGGTCGGCCTTGGAGGCGTTAGCACCGCTGGTGGCGGTGGCGGCGAGTTATTTGATCTGATGAACCCCCAGGAAGATCGACGCGACAACGGAGGCGTACTAAAGAGGGAAGAGATCGTTCCTAGCTATGATTTCCAACCCATCCGTCCGGTGACGTCTCTCCCATCTAGCTCCGGCGATGACGCGAGCAGACATTCTAGGTTCTCATCAGGAGGCCTTTTTGGAGAGCCAACTCTTGGTCCTGACATCTCGCTTGCTCATCGTTATGGCGCTTCAGTGGATGATGTAGAAGTCACAGTTAAGAAGTATGCTGATATTATTTTACAAACACTTGAAGGTATGGGTTCAAGGTTATCACAGCTTGAAAGTAGAACATGCATACTAGAAAACTCTGTTGATGACCTGAAGGTTTCAATTGGGAATAACTATGGAAGCGCTGATGGAAAGTTGAGACAACTAGAGATTATTTTAAGAGAGGTACAGACTGGTGTTCAAGTCCTACGGGACAAGCAAGAGATTGCGGAGGCTCATCTCGAGCTCACAAAATTGCAGCTTTCATCTAAAGCGGATCACCCAATATCCGAGAGCCTGCAGGCATTGCCCGAGTTGCAACAGAAGCAGCAGTATCAGCAGCCTCCTCCGCAACAAACCCCCCAATCTTCGAGCCCTCTCTCAGCTCCAAATGCCCCACCATCACCTCTTCCGCAACAAAGCAAGCCTCCCATCTCTTATGCCCCTCAGCTACCACTGCAGCCCCCCCACATGCCCCCCTCCACTATCCCTCCTCCCGCTCAAGATCAGCCTTCCTGCCCCAAACCATCGCATCAGTCATCCCAATACCCTCTCTCGCCAGGGCATCCAAATGAATTGTCTCTTCAGCAGCCACAGCAGTACCAAATGCCTCATCCCCAGCTTTACCAGCCACCACCTCAGATACAGCAGTACTCCCAGCCTATACAACCAGAAGACCCTCTGAGCGCATATATGCCACCCCCATCTCAGGCCTACACCCCAAGTATTCGACAGCCCTCCCCTCCTCAGCCCCCTGCCGGACCTCCAATACATCAGTACTATGGTACCACTACTAACCTTCCTCCGCAGTTGTATGACCTCCCGCATGCAAGCCGGCCTAGTTTCGCAGGACCGGGGCCAGGTTTCTCCGAGCCATATCTATACGGAAATTCCCAGTCCCAATTCAATTCAAAACTGACTCCTTTGAGCGGAAGCTACCAGCGCCTCCCTACAGCAAAGATACTTCCTCAAGCTGCCCCGGTGGGGAGCTCCAGCCCGTCTGGAAATAGGGTTCCTGTAGATGATGTGGTGGACAAGGTTGCAACCATGGGATTCTCGAGGGAACAGGTCAGGGCGACGGTGAGGAAACTGACGGAGAATGGGCAATCCGTCGATCTGAATGTGGTGCTGGATAAGCTCATGAACGATGGAGAAGTGCATCAGCCGGTGAAGGGATGGTTTGGAAGATGATGATAATCCCTTGTTTACTCTTCTGCTTCTGTGTATAATAATGTTGTTCTGATTCCTGCTTCTGAACAATATTATGCCTGTTATTGTTTACTGATAATAACACATGGATTTTCTTCTTACATTTTTGTTCCTCGTTATT

Network for GWHGAAEX008619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07223.10	DUF1421	454	498	4.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.480
SRP064423	SRR2545915	Juvenile tuber	32.300
SRP108465	SRR5643513	five period of Gastrodia elata	47.290
	SRR5643514	five period of Gastrodia elata	46.620
	SRR5643515	five period of Gastrodia elata	44.830
	SRR5643524	five period of Gastrodia elata	50.240
	SRR5643525	five period of Gastrodia elata	62.630
	SRR5643528	five period of Gastrodia elata	69.370
	SRR5643658	five period of Gastrodia elata	88.000
	SRR5643659	five period of Gastrodia elata	49.290
	SRR5643660	five period of Gastrodia elata	52.090
	SRR5643661	five period of Gastrodia elata	56.420
	SRR5643662	five period of Gastrodia elata	53.850
	SRR5643663	five period of Gastrodia elata	52.940
	SRR5643664	five period of Gastrodia elata	56.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.880
SRP279888	Gastro	Gastrodia elata tuber	48.44
	Juven	Juvenile tuber	55.64
	Mother_Gastro	Mother tuber of Gastrodia elata	47.60
	Mother_Juven	Mother tuber of Juvenile	58.95