Gene detail

Detail information of GWHGAAEX008620/evm.TU.scaffold_226.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325958565\|ref\|YP_004290031.1\|	1.00E-39	DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
KOG	KOG1522	1.00E-172	RNA polymerase II, subunit POLR2C/RPB3
nr	gi\|720078257\|ref\|XP_010241296.1\|	0	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like [Nelumbo nucifera]
Swissprot	tr\|Q39211\|NRPB3_ARATH	3.00E-173	DNA-directed RNA polymerases II, IV and V subunit 3
trEMBL	tr\|M0S369\|M0S369_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P26120_001}
TAIR	AT2G15430	1.00E-172	DNA-directed RNA polymerase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000226	447551	472059	-

Transcript Sequence
>GWHTAAEX008620 GAAAGCATTAAGACCAAAATAATTAATCCAAGCGAATTTAAGAATGCATAATGTATCGTATATTTACCGGCGGGCTTAGCCGTTTGCCCTAATCACCGCCGTTGTCCCCTGTTTCTCCCGACTGCCCTTTATCCGGCGACAATGGAGGGCGTATCATACCAGCGCTTCCCTAAGATCAAAATCCGTGAAATGAAGGAAGACTACTTGAAGTTCGAACTCCGGGAGACTGACGCGAGCATGGCAAACGCCCTCCGGCGCGTGATGATCGCCGAGGTACCGACGATTGCGATTGATCTGGTCGAGATCGAGGCCAACTCATCTGTCTTAAACGACGAGTTCATCGCCCATCGACTTGGGCTGATTCCCCTCGTGAGCGATGACGCCATGGGGATGCGTTTCTCTCGCGATTGCGATGCCTGCGATGGAGATGGCCAGTGCGAGTACTGCTCCGTTGAGTTCCATCTTAACGTGCGGTGCGATTCTGACCAGACACTGGATGTAACAAGCAACGATCTACGCAGCACGGAACCGAGGGTCGTTCCCGTTGACGTGGCAGCCCGCTCACTCGCATCTGAAGCTGGAGGCTATGATTCCCAGGACCAGAGGGGAATACTAATTGTAAAGTTGCGGCGTGGACAAGAATTGAGATTAAGGGCAATCGCAAGAAAAGGAATTGGTAAGGATCATGCAAAATGGTCACCTGCTGCCACTGTAACTTTTTTGTATGAACCAGACATTCATATTAATGAAGATCTGATGGAAACCTTAACACTCGATGAAAAAAGAAGTTGGGTTGAAAGCAGCCCCACCAAAGTATTTGACATTGATCCTAACACACATCAGGTTAGGGTGGTTGATGCGGAGGCGTACACTTACGACGAAGAAGTGATAAAGAAGGCGGAAGCGATGGGAAAGCCGGGGCTTGTCGAGATCTGCGCCAAGGAGGACAGCTTCATCTTCACAGTTGAGTCCACTGGTGCAATCAAAGCCTATCAAATGGTAATCAATGCCGTTGAAATCCTCAAGCAAAAGCTTGATGCCGTCCGCCTCCAAGACACTGAGGAGGCCGACATTGGAGAACTGACCCAACACCTTGGCCGCGGCGGGCTCTGATCCTCCGTTTATTTGGTTGTTTATTTGTAGTCAATGATCCTTCGTGTTTGTGGATTGAAATGCGCACATCAGACGACCCTAGGGTTTATGTGATTGAATGTTCTTGGGTGACTTGAGCCAAGTTACCTAGCTGCATGTGTGTTGTAACAATTTACTTGGGTCTAAATTTGGGTTAAGGCTGCAATATTGTTAGTGTTAGTAACATTAATCTCATCTATTTCTTATGTCTGATATGTGTGCCGCATTGCTCAATTAATGTATGAAAAGTTTGAAATACAAGTTTATAGAGGAAATGTAAAATATCATTGTATTTTACTGTAGTTTTATAAAAAATGTACAATGAGTTAATAGAAAACTTT

Network for GWHGAAEX008620

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01193.23	RNA_pol_L	23	298	2.20E-21
PF01000.25	RNA_pol_A_bac	53	186	1.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03011	RPB3, POLR2C	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	114.200
SRP064423	SRR2545915	Juvenile tuber	52.670
SRP108465	SRR5643513	five period of Gastrodia elata	45.440
	SRR5643514	five period of Gastrodia elata	40.700
	SRR5643515	five period of Gastrodia elata	38.440
	SRR5643524	five period of Gastrodia elata	37.390
	SRR5643525	five period of Gastrodia elata	83.530
	SRR5643528	five period of Gastrodia elata	53.670
	SRR5643658	five period of Gastrodia elata	64.980
	SRR5643659	five period of Gastrodia elata	54.480
	SRR5643660	five period of Gastrodia elata	59.530
	SRR5643661	five period of Gastrodia elata	53.710
	SRR5643662	five period of Gastrodia elata	54.360
	SRR5643663	five period of Gastrodia elata	50.190
	SRR5643664	five period of Gastrodia elata	59.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	68.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	88.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	90.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	96.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	64.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.220
SRP279888	Gastro	Gastrodia elata tuber	72.87
	Juven	Juvenile tuber	91.08
	Mother_Gastro	Mother tuber of Gastrodia elata	54.89
	Mother_Juven	Mother tuber of Juvenile	43.07