Detail information of GWHGAAEX008622/evm.TU.scaffold_226.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG11008.00E-81Predicted E3 ubiquitin ligase
nrgi|719984853|ref|XP_010251199.1|4.80E-117PREDICTED: E3 ubiquitin-protein ligase BOI-like [Nelumbo nucifera]
Swissprottr|F4IDI6|BRG2_ARATH3.00E-24Probable BOI-related E3 ubiquitin-protein ligase 2
trEMBLtr|M5XBX2|M5XBX2_PRUPE2.00E-105Uncharacterized protein {ECO:0000313|EMBL:EMJ23612.1}
TAIRAT1G106508.00E-81SBP (S-ribonuclease binding protein) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000226493888501221+
Transcript Sequence

Network for GWHGAAEX008622

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_32933298.90E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms433.140
SRR2545915Juvenile tuber520.000
SRP108465SRR5643513five period of Gastrodia elata139.430
SRR5643514five period of Gastrodia elata124.600
SRR5643515five period of Gastrodia elata112.900
SRR5643524five period of Gastrodia elata108.620
SRR5643525five period of Gastrodia elata147.750
SRR5643528five period of Gastrodia elata114.380
SRR5643658five period of Gastrodia elata195.880
SRR5643659five period of Gastrodia elata234.900
SRR5643660five period of Gastrodia elata287.040
SRR5643661five period of Gastrodia elata235.240
SRR5643662five period of Gastrodia elata306.470
SRR5643663five period of Gastrodia elata336.020
SRR5643664five period of Gastrodia elata407.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1276.880
SRR6049655Rhizomagastrodiae_C368-T10_good_1178.710
SRR6049656Rhizomagastrodiae_C368-T07_good_1229.860
SRR6049657Rhizomagastrodiae_C368-T07_good_1355.820
SRR6049658Rhizomagastrodiae_C368-T04_good_1410.690
SRR6049659Rhizomagastrodiae_C368-T04_good_1495.480
SRR6049660Rhizomagastrodiae_C368-T01_good_1459.970
SRR6049661Rhizomagastrodiae_C368-T04_good_1367.130
SRR6049662Rhizomagastrodiae_C368-T01_good_1171.680
SRR6049663Rhizomagastrodiae_C368-T01_good_1243.450
SRR6049664Rhizomagastrodiae_C368-T10_good_1137.190
SRR6049665Rhizomagastrodiae_C368-T10_good_1137.190
SRP279888GastroGastrodia elata tuber 435.50
JuvenJuvenile tuber289.56
Mother_GastroMother tuber of Gastrodia elata 157.07
Mother_JuvenMother tuber of Juvenile 168.45