Gene detail

Detail information of GWHGAAEX008623/evm.TU.scaffold_226.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338733518\|ref\|YP_004671991.1\|	4.00E-81	ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
KOG	KOG0331	0	ATP-dependent RNA helicase
nr	gi\|672138087\|ref\|XP_008792789.1\|	0	PREDICTED: ATP-dependent RNA helicase-like protein DB10 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LYJ9\|RH46_ARATH	0	DEAD-box ATP-dependent RNA helicase 46
trEMBL	tr\|B9S627\|B9S627_RICCO	0	Dead box ATP-dependent RNA helicase, putative {ECO:0000313\|EMBL:EEF40936.1}
TAIR	AT3G01540	0	DEAD box RNA helicase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000226	508691	512257	-

Transcript Sequence
>GWHTAAEX008623 TGGCTTGCATGCAGCTGGAGCGACCCAAACTGCTGCTCTCTTTGGGGCGGCTTGCATGTAGCCGGAGTGATCCAAACTGCTTCCCTCTTTGGGGGTGGTTTACATGTAGCTGGAGTGACCCAAACTGCTGCTCTCTTTGGGGGTGGTTTACATGTAGCTGAAGCGACCCTCGCAGTGGACCAAGTATTGGGGAACCTTTTAAGTCAGCAGTCCCCATGGGTGGTCTGCTTCTGCAATTTTGTTCAGACTGTCCCTCAGTCAATTAAAGAAGGCCCTTTTCTCTGGCTCCAGCTTGCATCTGCAAGCAGTTGTCTGCGCCCAGAGGATACACATCTTGTGGCATTAGCTAAACCCTCCACTTTACTTTCAATTCCAAATATGACAAGTCTAAAAAGAGAACCAAATGATTATAACATAGAACAACGGTACCCTTCACAAATTGCATTTTGTTTTCCAGGTACAGCGTGCAGGTTTCCCTTCTCCTACTCCAATTCAGGCTCAATCGTGGCCCATCGCATTGCATGGTCGTGATATTGTCGCTATTGCAAAGACCGGTTCAGGGAAAACAATTGGTTATCTCTTTCCAGGGTTTGTACATCTTAAACATCTTCGCAACAACCCAAAAATGGGGCCTACAGTTTTAGTTCTTTCACCTACTAGAGAACTGGCTACCCAGATACAAGATGAGGCTGAGAAATTTGGGCGATCATCAAGGATTTCTTGCACCTGTTTATATGGCGGTGCTCCAAAAGGCCCGCAGTTGAGGGATTTAGATCGAGGAGTCGACATTGTTGTTGCAACCCCAGGAAGATTGAATGACATTATGGAGATGAAAAGAATCAGCTTGCGCCAAGTCTCATATTTGGTTCTTGACGAAGCTGACCGCATGCTAGACATGGGGTTTGAACCGCAGATAAGGAAAATTGTAAAGGAAGTTCCTCAACGTCGCCAGACTCTGATGTTCACTGCCACTTGGCCTAAAGAAGTGCGAAAGATTGCTGCAGATTTACTGGTAAACCCTATTCAAGTCAATATCGGCAGCATTGATGCGCTTGTCGCCAACAAAGCCATCACCCAGTATGTGGAACTAATAAAACCGGTTGAAAAGCTAAGGAGATTAGAGCAGATACTGAAGTCCCAGGAAACTGGCTCGAAGATCATAATATTTTGCACTACGAAGAGGATGTGTGACCAGCTGGCAAGGTCCCTTGTTCGCCAGTTTGGCGCCGCTGCTATTCACGGGGACAAGTCGCAGGTAGAGCGAGATCGGGTTCTGAGCCAGTTCAAGTCTGGGAGATCGCCAATTCTTGTCGCCACTGACGTTGCCGCCCGGGGCCTGGACATCAAGGATATCAGAGTTGTGATCAACTATGATTTTCCTACCGGCGTTGAGGACTATGTTCATAGGATTGGGAGAACAGGAAGGGCAGGCGCCACTGGGGTTTCTTACACGTTCTTCTCTGATCAAGATTTCAAGTATGCCCTGGAGCTGGTCAAAGTTCTGGAAGGGGCGGATCAGAAGGTCCCGCCGGAGCTCCGGGACATGGCAGCACGCGGCGGTTATGGCGGCAAGTCCCGGCGTTGGGCCTCTTGTTCTGATACTCGGGATCGAGCCCGACTCGGGGCTGCCCGTAATGATTTTTCAAGCAGTGCTAGGAGAAGCGGGCATCCCCCGCCTTCTTTGGCCAGAGTTGACACCACCCATCATGACCGCAGTAATCATGGGGACAGATACAGTCGTGCCAATGGGCGTGCCATAGATAGATATGCTGGCAATGAAGCCAAAGGCATGTCAAGAGGTCGCAGCCGTAGTTATAGCTCTAGCCCAACAAGAAGAGGGCATGGTGTGTTAGGCAGTGGTCGAAGCCGAAGTCGCAGCCGCAGCAAGAGCCTGGACAAATCTCGAAGCAGGAGTCGTAGTCATAGCATTGGACGAAACAACGGAAGGCCGTCTCCGCCGAGCAAGAGGAAGGTGAAACCCAGCGACCACAAGAAAAGAAGAGAGAGTTCGCGCGATCGCTATCGGGGCTGCCTGTCGCCATCTCCCAGAAGGGAGAGATCCGCTGACCATCATCACGGACGATCTCCGCCGCCCAAAAGAGACGATCTTACAGGCCGGCACCATTTTTTGTCACCTCAATCAAAAAGGCCGCCGTCCGATGGATTAAATTCGGCTGATGATGGTGCTGACAGGTCAAGGATACCATCCTCTGCCAACGGAGATGTTTCTCGTATTTCAGCATCGAGGGCTAGCTCTCGAAGCCCGCACGGGCAGATGACTAGATCTCCGTTCCGGCAAATAACGGAGAACGGAACTCAACCTGATGGGCAAAGGTTGTATGAGCGTGAAGGTGGCATGGAACCTGAAGAGCTCTTTGATGGGCCTGCACGGCTGACTGTAAATGGGGAAGAGGAAGAGGAAGGCTTGATTCAGCCCTATGAAGTGGAAGGTACAACAAATCTTAAACGTGTTGGTTGATTATAGGAATAAATGAAAGCAGGGGCACATGTCTCTCTTTGGGAGCTGCTGCTGCCCTTGTTATATAGGAGGAAAATACCCCTCCCAGATTTAGTTTTTATTGTGGCCTGCAGGTACTGGGACCTGAGAAAAATAGTGCTTTGAACTGCTTTATGCATAATTCATTTCATCCCCTATCATTGCATGCTTGCTGATTTAGATTTCTTAAGGTATTTTTTTGTTTTGATTGTTTGATAAATCTATGTACTAAAAATTGGTTGATGCTGCACATTTTTGAAATGGGTTCGCATTTTATTTATACTCATTTTTGTGTTTTTTGAAATGAAATTTGTTAGATTTTATTGGAATTGCA

Network for GWHGAAEX008623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	2	124	3.40E-35
PF00271.30	Helicase_C	160	269	2.20E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.180
SRP064423	SRR2545915	Juvenile tuber	65.100
SRP108465	SRR5643513	five period of Gastrodia elata	157.740
	SRR5643514	five period of Gastrodia elata	165.050
	SRR5643515	five period of Gastrodia elata	183.710
	SRR5643524	five period of Gastrodia elata	171.480
	SRR5643525	five period of Gastrodia elata	263.110
	SRR5643528	five period of Gastrodia elata	206.740
	SRR5643658	five period of Gastrodia elata	214.230
	SRR5643659	five period of Gastrodia elata	250.180
	SRR5643660	five period of Gastrodia elata	304.220
	SRR5643661	five period of Gastrodia elata	307.110
	SRR5643662	five period of Gastrodia elata	287.250
	SRR5643663	five period of Gastrodia elata	279.870
	SRR5643664	five period of Gastrodia elata	280.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	139.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	131.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	145.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	113.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	156.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	146.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	131.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	150.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	142.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	147.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	147.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	147.710
SRP279888	Gastro	Gastrodia elata tuber	393.66
	Juven	Juvenile tuber	279.77
	Mother_Gastro	Mother tuber of Gastrodia elata	508.30
	Mother_Juven	Mother tuber of Juvenile	351.80